当前解析结果
SmilChr08G002430| 统一新 Gene ID | SmilChr08G002430 |
|---|---|
| 名称 | SmilChr08G002430 |
| 描述 | uncharacterized SmilChr08G002430 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 23110913 - 23120419 / + |
| NCBI Gene ID | LOC131001949 |
|---|---|
| GeneID | 131001949 |
| locus_tag | - |
| NCBI Name | LOC131001949 |
| 原始查询 | SmilChr08G002430 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818504]; symbol=ATATH8; hit=AT2G39190; species=arabidopsis; confidence=high |
| 产物 | Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818504]; symbol=ATATH8; hit=AT2G39190; species=arabidopsis; confidence=high |
| Arabidopsis | AT2G39190 (ATATH8)Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818504] identity=54.6; qcov=1.02; evalue=0; confidence=high |
| Rice | Os02g0805800- identity=53.1; qcov=0.907; evalue=0; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF03109 (ABC1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001949 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057784582.1 |
| 2 | Chloroplast thylakoid | 类囊体 | 1.00000 | XP_057784582.1 |
| 3 | Chloroplast membrane | 叶绿体膜 | 0.80000 | XP_057784582.1 |
| 4 | Chloroplast thylakoid membrane | 类囊体膜 | 0.40000 | XP_057784582.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057784582.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:23111114 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B26,B44 |
Chr8:23111227 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B8 |
Chr8:23111236 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A23,C71 |
Chr8:23111245 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A8,B84 |
Chr8:23112303 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C87 |
Chr8:23112903 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B80 |
Chr8:23112922 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B80 |
Chr8:23114644 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B1,B103,B52,C85 |
Chr8:23114670 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B113,B136,B60,B69 |
Chr8:23116514 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A23,C71 |
Chr8:23117547 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B80 |
Chr8:23117841 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A11,A3 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057784582.1PF03109
ABC1 239-480 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057784582.1 |
Pfam | PF03109 |
ABC1 | Domain | 239 | 480 | 2.6e-70 | 237.1 | ABC1 atypical kinase-like domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。