Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002437`

染色体: Chr08 坐标: 23199251-23209887 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002437`
名称	SmilChr08G002437
描述	uncharacterized SmilChr08G002437
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	23199251 - 23209887 / `+`

ID 对照

NCBI Gene ID	`LOC131001956`
GeneID	`131001956`
locus_tag	`-`
NCBI Name	`LOC131001956`
原始查询	`SmilChr08G002437`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Duplicated homeodomain-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:824390]; symbol=AT3G52250; hit=AT3G52250; species=arabidopsis; confidence=medium
产物	Duplicated homeodomain-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:824390]; symbol=AT3G52250; hit=AT3G52250; species=arabidopsis; confidence=medium
Arabidopsis	`AT3G52250` (AT3G52250) Duplicated homeodomain-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:824390] identity=38.1; qcov=0.757; evalue=1.69e-108; confidence=medium
Rice	`-` -
GO	-
KEGG	-
Pfam	PF00249 (Myb_DNA-binding); PF25826 (DUF7952)
InterPro	-
eggNOG	-
NR	GeneID:131001956

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057784586.1`
2	Chromosome	染色体	0.00000	`XP_057784586.1`
3	Centromere	着丝粒	0.00000	`XP_057784586.1`
4	Chromatin	染色质	0.00000	`XP_057784586.1`
5	Telomere	端粒	0.00000	`XP_057784586.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:23199765`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B118,B44,B60
`Chr8:23200425`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B118,B44,B60,C25
`Chr8:23200559`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr8:23200681`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C87
`Chr8:23200852`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B42,B43
`Chr8:23200913`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B68
`Chr8:23200913`	`TG`	`T`	1bp_deletion	CDS_variant	1	B68
`Chr8:23200949`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B120,C41
`Chr8:23200971`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C35
`Chr8:23203940`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B26,B44,C16,C43
`Chr8:23204158`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C87
`Chr8:23204180`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B90,B92

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784586.1

1063 aa

532

1063

Myb_DNA-binding

DUF7952

PF00249 Myb_DNA-binding 828-870 aa PF25826 DUF7952 829-894 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057784586.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	828	870	1.6e-09	38.4	Myb-like DNA-binding domain
`XP_057784586.1`	Pfam	`PF25826`	DUF7952	Domain	829	894	2.6e-08	34.8	Domain of unknown function (DUF7952)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057928603.1
CAAAAGAAAAGAAAGTGAGAACTCTCTCTCACTACTCTCTCTCTCTCTCTCCTTTTTTCTTTGTCTCTTATCATTTCACTTCCCCCTAACCCCAGATTTTCTTTTCTCCCTTCTTCCCTCTTTTCCAACCCCCAAAAACCAACGGAAAAAGGAAAAATAAAATTCACAAAAACCCACATAAATTCATCTCTTGTTCGTCTGTCTCTCGGCTTTGGAACCTAAATTCGGCCCACCGGCGAATCAGTGGCCGTTGCTTTTTT...

CDS

1 records

下载 CDS FASTA

LOC131001956
ATGCCGCCGGAGCAATTGCCGTGGGATCGAAGGGATTTCAGGAAGCACGAGAGATCCGGCTCCGACCCGCGCTTTGGTGGCGGGGGATTCGGCGGCGGCGGTCCTCACAGATGGCGGGAGCAGAACCACCACCCGCACGCGCCACCGCCGCACCCCACGCCCTACCACCACGGCCACAGCCAGAACCACCAGCAGCAGCGCTGGTATTCGGACTTCCGCTCCTCGCGCCCTATCCCACCTGGTCATGGTAAGCAGGGTGG...

Protein

1 records

下载 Protein FASTA

XP_057784586.1
MPPEQLPWDRRDFRKHERSGSDPRFGGGGFGGGGPHRWREQNHHPHAPPPHPTPYHHGHSQNHQQQRWYSDFRSSRPIPPGHGKQGGGWHMYPDDAGHGFMPFGSRYGDRNLEDDNFRPFTNRGDGRYFRNSRENRGGSFNQRDWKSTSWEPAASSSASGPGRPTSEVNTQKSVENTETCHDNNNKSNGSCHPPPDPLPSQSPPPVKENNEKNEDGADELASSDQKSEKEENGLGSIDWKPLKWSRSGSLSSRGSGLSHS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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