Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002441`

染色体: Chr08 坐标: 23233746-23239027 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002441`
名称	SmilChr08G002441
描述	transcription factor GTE6
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	23233746 - 23239027 / `-`

ID 对照

NCBI Gene ID	`LOC131001961`
GeneID	`131001961`
locus_tag	`-`
NCBI Name	`LOC131001961`
原始查询	`SmilChr08G002441`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	transcription factor GTE6
产物	transcription factor GTE6
Arabidopsis	`AT2G34900` (IMB1) Transcription factor GTE6 [Source:NCBI gene (formerly Entrezgene);Acc:818055] identity=49.6; qcov=0.954; evalue=3e-114; confidence=high
Rice	`Os06g0138000` - identity=57.4; qcov=0.328; evalue=7.29e-41; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00439 (Bromodomain); PF17035 (BET)
InterPro	-
eggNOG	-
NR	GeneID:131001961

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057784597.1`
2	Chromosome	染色体	0.20000	`XP_057784597.1`
3	Centromere	着丝粒	0.00000	`XP_057784597.1`
4	Chromatin	染色质	0.00000	`XP_057784597.1`
5	Telomere	端粒	0.00000	`XP_057784597.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:23234063`	`GA`	`G`	1bp_deletion	frameshift_variant	1	B6
`Chr8:23234063`	`GA`	`G`	1bp_deletion	CDS_variant	1	B6
`Chr8:23234128`	`GGA`	`G`	2bp_deletion	frameshift_variant	9	B109,B12,B127,B4,B54,B82,C10,C36,C38
`Chr8:23235476`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B59
`Chr8:23235530`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B59
`Chr8:23235544`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:23235558`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B10,B105,B139,B28,D4
`Chr8:23235987`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B113,B136,B60,B69
`Chr8:23235988`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:23236012`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B140,B97,C4,C46
`Chr8:23237338`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A15,C67,D9
`Chr8:23237379`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B59

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784597.1

372 aa

186

372

Bromodomain

BET

PF00439 Bromodomain 107-192 aa PF17035 BET 266-328 aa

XP_057784599.1

372 aa

186

372

Bromodomain

BET

PF00439 Bromodomain 107-192 aa PF17035 BET 266-328 aa

XP_057784600.1

372 aa

186

372

Bromodomain

BET

PF00439 Bromodomain 107-192 aa PF17035 BET 266-328 aa

XP_057784601.1

372 aa

186

372

Bromodomain

BET

PF00439 Bromodomain 107-192 aa PF17035 BET 266-328 aa

XP_057784602.1

372 aa

186

372

Bromodomain

BET

PF00439 Bromodomain 107-192 aa PF17035 BET 266-328 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057784597.1`	Pfam	`PF00439`	Bromodomain	Domain	107	192	6.7e-18	65.2	Bromodomain
`XP_057784597.1`	Pfam	`PF17035`	BET	Domain	266	328	2.6e-19	69.8	Bromodomain extra-terminal - transcription regulation
`XP_057784599.1`	Pfam	`PF00439`	Bromodomain	Domain	107	192	6.7e-18	65.2	Bromodomain
`XP_057784599.1`	Pfam	`PF17035`	BET	Domain	266	328	2.6e-19	69.8	Bromodomain extra-terminal - transcription regulation
`XP_057784600.1`	Pfam	`PF00439`	Bromodomain	Domain	107	192	6.7e-18	65.2	Bromodomain
`XP_057784600.1`	Pfam	`PF17035`	BET	Domain	266	328	2.6e-19	69.8	Bromodomain extra-terminal - transcription regulation
`XP_057784601.1`	Pfam	`PF00439`	Bromodomain	Domain	107	192	6.7e-18	65.2	Bromodomain
`XP_057784601.1`	Pfam	`PF17035`	BET	Domain	266	328	2.6e-19	69.8	Bromodomain extra-terminal - transcription regulation
`XP_057784602.1`	Pfam	`PF00439`	Bromodomain	Domain	107	192	6.7e-18	65.2	Bromodomain
`XP_057784602.1`	Pfam	`PF17035`	BET	Domain	266	328	2.6e-19	69.8	Bromodomain extra-terminal - transcription regulation

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057928616.1
TAGTTTACTTCATAAAAAGTGCGACTCCCAAACTAATTCCCAAAAACCCGCCGCCATTCCCATCACCTTCTTCCTTTCCATAAATCTGCCGCCGCCGGTGAAACCTTGAATAAGTGGAAGAAGGCAAGGGGGATCTCGTCTCAGTGTCCGCAATAGCAGATTCATCTTCCTACCGTCTCTAAATCTCAAAGCCACGATGGATTTGGTGAATGCATCAATAAGTGGCCCAACAAATATAGGAGAAATGGCTCCAGAAGGTA...

XM_057928618.1
TAGTTTACTTCATAAAAAGTGCGACTCCCAAACTAATTCCCAAAAACCCGCCGCCATTCCCATCACCTTCTTCCTTTCCATAAATCTGCCGCCGCCGGTGAAACCTTGAATAAGTGGAAGAAGGCAAGGGGGATCTCGTCTCAGTGTCCGCAATAGCAGATTCATCTTCCTACCGTCTCTAAATCTCAAAGCCACGTTACAACAGCCAGGCAAGTTTCAAGGCAGCTAGATGATAGTAATTGGAACTAAACTCTGTTCCA...

CDS

5 records

下载 CDS FASTA

LOC131001961
ATGGATTTGGTGAATGCATCAATAAGTGGCCCAACAAATATAGGAGAAATGGCTCCAGAAGGTAATCCAGCTGAAGCAGATTGTTATAAGGGACAAGTTGATGAGCTCTTCGTGAAGGTTGAGCAACTTGAGCAAAGAGTAAATGAAGTTGAACAGTTTTACTTGAATACAACAACAAAGCAACCAAACAATTCCAGAAATACTTTAATAGTAAAGGAGAAGCATATTCCTAGCATAAAAAAACTACAGCAGGATGCTTC...

Protein

5 records

下载 Protein FASTA

XP_057784597.1
MDLVNASISGPTNIGEMAPEGNPAEADCYKGQVDELFVKVEQLEQRVNEVEQFYLNTTTKQPNNSRNTLIVKEKHIPSIKKLQQDASRREATAAKRMQDLMRQFGSIFRQITQHKWAWPFLQPVDVEGLELDDYYQIIDRPMDFSTIKNQMEAKDGTGYKHVREICSDVRLVFKNAIKYNDEKSDVHRMAKKLLEVFEEKWLKFLPKVIEEEEKREQEEAEAEISMQLAQEASHAKLARDISTELYDIDMHIEELREMVV...

XP_057784599.1
MDLVNASISGPTNIGEMAPEGNPAEADCYKGQVDELFVKVEQLEQRVNEVEQFYLNTTTKQPNNSRNTLIVKEKHIPSIKKLQQDASRREATAAKRMQDLMRQFGSIFRQITQHKWAWPFLQPVDVEGLELDDYYQIIDRPMDFSTIKNQMEAKDGTGYKHVREICSDVRLVFKNAIKYNDEKSDVHRMAKKLLEVFEEKWLKFLPKVIEEEEKREQEEAEAEISMQLAQEASHAKLARDISTELYDIDMHIEELREMVV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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