Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002447`

染色体: Chr08 坐标: 23270443-23275855 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002447`
名称	SmilChr08G002447
描述	cell division control protein 48 homolog C-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	23270443 - 23275855 / `-`

ID 对照

NCBI Gene ID	`LOC131001966`
GeneID	`131001966`
locus_tag	`-`
NCBI Name	`LOC131001966`
原始查询	`SmilChr08G002447`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	cell division control protein 48 homolog C-like
产物	cell division control protein 48 homolog C-like
Arabidopsis	`AT3G01610` (CDC48C) cell division cycle 48C [Source:NCBI gene (formerly Entrezgene);Acc:821105] identity=45.5; qcov=0.863; evalue=7.4e-115; confidence=high
Rice	`Os06g0109400` - identity=53.1; qcov=0.738; evalue=4.22e-133; confidence=high
GO	GO:0003723 (RNA binding); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0016887 (ATP hydrolysis activity); GO:0042254 (ribosome biogenesis); GO:0051973 (GO:0051973); GO:1990275 (preribosome binding)
KEGG	smil03008 (Ribosome biogenesis in eukaryotes - Salvia miltiorrhiza (redroot sage))
Pfam	PF00004 (AAA); PF05496 (RuvB_N)
InterPro	-
eggNOG	-
NR	GeneID:131001966

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.60000	`XP_057784607.1`
2	Cytoplasm	细胞质	0.60000	`XP_057784607.1`
3	Cytosol	细胞质基质	0.60000	`XP_057784607.1`
4	Chromosome	染色体	0.00000	`XP_057784607.1`
5	Centromere	着丝粒	0.00000	`XP_057784607.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:23270892`	`CT`	`C`	1bp_deletion	frameshift_variant	21	A20,A25,A4,A5,A8,B103,B138,B37,B47,B52,B55,B7,B80,B99,C22,C31,C34,C61,C70,C87,D10
`Chr8:23270907`	`G`	`A`	EMS_canonical_SNV	stop_gained	15	B106,B2,B25,B40,B44,B54,B57,B60,B61,B67,B83,C27,C6,C76,D9
`Chr8:23270936`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr8:23271188`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B120,C41
`Chr8:23271207`	`G`	`A`	EMS_canonical_SNV	stop_gained	40	A19,B10,B101,B102,B11,B112,B113,B115,B121,B123,B124,B125,B129,B136,B14,B16,B25,B35,B45,B58,B62,B68,B79,B9,B93,B94,C11,C13,C20,C21,C25,C26,C3,C30,C36,C43,C52,C58,C69,C74
`Chr8:23271242`	`G`	`A`	EMS_canonical_SNV	stop_gained	15	B106,B118,B2,B25,B40,B44,B54,B57,B61,B67,B83,C27,C6,C76,D9
`Chr8:23271276`	`A`	`AC`	1bp_insertion	frameshift_variant	4	A23,A5,C40,C56
`Chr8:23271276`	`A`	`AC`	1bp_insertion	CDS_variant	4	A23,A5,C40,C56
`Chr8:23271286`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B15,B41,C15
`Chr8:23271593`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C71
`Chr8:23272871`	`G`	`GC`	1bp_insertion	frameshift_variant	14	A10,B12,B122,B13,B24,B34,B45,B56,B96,C53,C54,C78,C84,C85
`Chr8:23272872`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A16,B33,B84,B96

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784607.1

699 aa

350

699

AAA

PF00004 AAA 172-310 aa PF00004 AAA 468-591 aa

XP_057784608.1

561 aa

280

561

RuvB_N

AAA

PF05496 RuvB_N 167-304 aa PF00004 AAA 172-310 aa PF00004 AAA 468-538 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057784607.1`	Pfam	`PF00004`	AAA	Domain	172	310	2.9e-54	183.8	ATPase family associated with various cellular activities (AAA)
`XP_057784607.1`	Pfam	`PF00004`	AAA	Domain	468	591	2.9e-54	183.8	ATPase family associated with various cellular activities (AAA)
`XP_057784608.1`	Pfam	`PF05496`	RuvB_N	Domain	167	304	5.7e-12	46.4	Holliday junction DNA helicase RuvB P-loop domain
`XP_057784608.1`	Pfam	`PF00004`	AAA	Domain	172	310	3.7e-50	170.5	ATPase family associated with various cellular activities (AAA)
`XP_057784608.1`	Pfam	`PF00004`	AAA	Domain	468	538	3.7e-50	170.5	ATPase family associated with various cellular activities (AAA)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057928624.1
GTAGGTTTGCATCAAAACAACATTCCCGCTTATTACTGGAAAACGACAACCGACCATGGCAACAGCTCTCCTGCCGTGGGAAGAACGAGCTCTGCGCAGCCACCTCGAGTGTGTTTCTGCCGGCAAAAAAAACCTCAGCCACGACCAACTGGTGGACCTACTCCTCTTCGCCCTCCCGCATACCTACTCCCGCCTCAACCGCAACCTCCTAACCCAACGCGTCGCCAAAATCATTCCGCTTCCATGCAGGAGACAAGACG...

XM_057928625.1
GTAGGTTTGCATCAAAACAACATTCCCGCTTATTACTGGAAAACGACAACCGACCATGGCAACAGCTCTCCTGCCGTGGGAAGAACGAGCTCTGCGCAGCCACCTCGAGTGTGTTTCTGCCGGCAAAAAAAACCTCAGCCACGACCAACTGGTGGACCTACTCCTCTTCGCCCTCCCGCATACCTACTCCCGCCTCAACCGCAACCTCCTAACCCAACGCGTCGCCAAAATCATTCCGCTTCCATGCAGGAGACAAGACG...

CDS

2 records

下载 CDS FASTA

LOC131001966
ATGGCAACAGCTCTCCTGCCGTGGGAAGAACGAGCTCTGCGCAGCCACCTCGAGTGTGTTTCTGCCGGCAAAAAAAACCTCAGCCACGACCAACTGGTGGACCTACTCCTCTTCGCCCTCCCGCATACCTACTCCCGCCTCAACCGCAACCTCCTAACCCAACGCGTCGCCAAAATCATTCCGCTTCCATGCAGGAGACAAGACGCCATTGACGAGCCTACTCCGGTCTCAAATAAACGGCCAAAAATAGGCGATCCTCG...

Protein

2 records

下载 Protein FASTA

XP_057784607.1
MATALLPWEERALRSHLECVSAGKKNLSHDQLVDLLLFALPHTYSRLNRNLLTQRVAKIIPLPCRRQDAIDEPTPVSNKRPKIGDPRTVNSQNEVSAYSSAEVDSSGSGGRINRSDELGDGWRGVSEKHNRPMFRDFWGMSSVIHELQRKVVAPLHQFKLLRHLGVEPATRILLHGPPRCGKTTLARAVANEAGLQLFELSAARFVSGVSGAAEETIRKLFSTAYMKAPSIVFIDDIDAISSITESLHKEIEHRLVNELM...

XP_057784608.1
MATALLPWEERALRSHLECVSAGKKNLSHDQLVDLLLFALPHTYSRLNRNLLTQRVAKIIPLPCRRQDAIDEPTPVSNKRPKIGDPRTVNSQNEVSAYSSAEVDSSGSGGRINRSDELGDGWRGVSEKHNRPMFRDFWGMSSVIHELQRKVVAPLHQFKLLRHLGVEPATRILLHGPPRCGKTTLARAVANEAGLQLFELSAARFVSGVSGAAEETIRKLFSTAYMKAPSIVFIDDIDAISSITESLHKEIEHRLVNELM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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