当前解析结果
SmilChr08G002448| 统一新 Gene ID | SmilChr08G002448 |
|---|---|
| 名称 | SmilChr08G002448 |
| 描述 | cell division control protein 48 homolog C-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 23287348 - 23294917 / - |
| NCBI Gene ID | LOC131001967 |
|---|---|
| GeneID | 131001967 |
| locus_tag | - |
| NCBI Name | LOC131001967 |
| 原始查询 | SmilChr08G002448 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cell division control protein 48 homolog C-like |
| 产物 | cell division control protein 48 homolog C-like |
| Arabidopsis | AT3G01610 (CDC48C)cell division cycle 48C [Source:NCBI gene (formerly Entrezgene);Acc:821105] identity=41.3; qcov=0.755; evalue=6.4e-117; confidence=medium |
| Rice | Os06g0109400- identity=43.1; qcov=0.741; evalue=6.93e-129; confidence=medium |
| GO | GO:0003723 (RNA binding); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0016887 (ATP hydrolysis activity); GO:0042254 (ribosome biogenesis); GO:0051973 (GO:0051973); GO:1990275 (preribosome binding) |
| KEGG | smil03008 (Ribosome biogenesis in eukaryotes - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00004 (AAA); PF05496 (RuvB_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001967 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057784609.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057784609.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057784610.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057784609.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057784609.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:23287562 |
T |
TGA |
2bp_insertion | frameshift_variant | 50 | A15,A16,A2,A20,A22,A25,A7,B10,B103,B107,B110,B114,B119,B124,B132,B133,B137,B19,B2,B20,B22,B37,B38,B41,B50,B61,B64,B67,B80,B86,B9,B90,B91,C24,C33,C38,C43,C44,C52,C53,C6,C64,C67,C72,C77,C78,C79,C81,D5,D9 |
Chr8:23287717 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B120,C41 |
Chr8:23288248 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A13,B18 |
Chr8:23288331 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B51,B90,B92 |
Chr8:23288419 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | B26 |
Chr8:23288419 |
AC |
A |
1bp_deletion | CDS_variant | 1 | B26 |
Chr8:23288701 |
AC |
A |
1bp_deletion | frameshift_variant | 2 | B77,C19 |
Chr8:23288701 |
AC |
A |
1bp_deletion | CDS_variant | 2 | B77,C19 |
Chr8:23288703 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B115,C39,C45,C80,D4 |
Chr8:23288920 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B6 |
Chr8:23288945 |
CG |
C |
1bp_deletion | frameshift_variant | 141 | A1,A10,A11,A14,A18,A19,A21,A24,A25,A3,A4,A6,A8,A9,B100,B101,B102,B11,B110,B112,B113,B114,B117,B120,B121,B122,B123,B124,B125,B127,B129,B13,B131,B133,B135,B136,B137,B138,B139,B14,B16,B17,B2,B20,B21,B25,B26,B28,B29,B30,B31,B32,B35,B38,B39,B41,B47,B5,B50,B53,B55,B57,B59,B60,B61,B62,B63,B65,B66,B67,B69,B7,B71,B72,B73,B75,B79,B81,B82,B84,B85,B86,B88,B9,B90,B91,B92,B93,B94,B99,C1,C11,C13,C14,C16,C17,C18,C21,C23,C24,C25,C26,C29,C3,C30,C31,C33,C36,C37,C41,C42,C43,C45,C48,C5,C51,C52,C54,C55,C56,C57,C58,C60,C63,C64,C65,C66,C67,C69,C70,C74,C75,C77,C8,C83,C86,C87,C9,D11,D5,D6 |
Chr8:23288976 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B58 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057784609.1PF05496
RuvB_N 213-343 aa
PF00004
AAA 218-347 aa
PF00004
AAA 507-584 aa
XP_057784610.1PF05496
RuvB_N 213-343 aa
PF00004
AAA 218-347 aa
PF00004
AAA 507-584 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057784609.1 |
Pfam | PF05496 |
RuvB_N | Domain | 213 | 343 | 4.3e-12 | 46.8 | Holliday junction DNA helicase RuvB P-loop domain |
XP_057784609.1 |
Pfam | PF00004 |
AAA | Domain | 218 | 347 | 8.5e-50 | 169.3 | ATPase family associated with various cellular activities (AAA) |
XP_057784609.1 |
Pfam | PF00004 |
AAA | Domain | 507 | 584 | 8.5e-50 | 169.3 | ATPase family associated with various cellular activities (AAA) |
XP_057784610.1 |
Pfam | PF05496 |
RuvB_N | Domain | 213 | 343 | 4.2e-12 | 46.8 | Holliday junction DNA helicase RuvB P-loop domain |
XP_057784610.1 |
Pfam | PF00004 |
AAA | Domain | 218 | 347 | 8.2e-50 | 169.4 | ATPase family associated with various cellular activities (AAA) |
XP_057784610.1 |
Pfam | PF00004 |
AAA | Domain | 507 | 584 | 8.2e-50 | 169.4 | ATPase family associated with various cellular activities (AAA) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。