Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002451`

染色体: Chr08 坐标: 23317262-23323598 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002451`
名称	SmilChr08G002451
描述	cell division control protein 48 homolog C
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	23317262 - 23323598 / `-`

ID 对照

NCBI Gene ID	`LOC131001969`
GeneID	`131001969`
locus_tag	`-`
NCBI Name	`LOC131001969`
原始查询	`SmilChr08G002451`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	cell division control protein 48 homolog C
产物	cell division control protein 48 homolog C
Arabidopsis	`AT3G01610` (CDC48C) cell division cycle 48C [Source:NCBI gene (formerly Entrezgene);Acc:821105] identity=55.5; qcov=0.995; evalue=0; confidence=high
Rice	`Os06g0109400` - identity=63.2; qcov=0.811; evalue=0; confidence=high
GO	GO:0003723 (RNA binding); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0016887 (ATP hydrolysis activity); GO:0042254 (ribosome biogenesis); GO:0051973 (GO:0051973); GO:1990275 (preribosome binding)
KEGG	smil03008 (Ribosome biogenesis in eukaryotes - Salvia miltiorrhiza (redroot sage))
Pfam	PF00004 (AAA); PF06068 (TIP49); PF07728 (AAA_5); PF16725 (Nucleolin_bd); PF17862 (AAA_lid_3)
InterPro	-
eggNOG	-
NR	GeneID:131001969

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.40000	`XP_057784614.1`
2	Cytoplasm	细胞质	0.40000	`XP_057784614.1`
3	Cytosol	细胞质基质	0.40000	`XP_057784614.1`
4	Endoplasmic reticulum	内质网	0.20000	`XP_057784614.1`
5	Chromosome	染色体	0.00000	`XP_057784614.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:23317773`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B36,C14
`Chr8:23318492`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A13,B125,B18
`Chr8:23318754`	`AT`	`A`	1bp_deletion	frameshift_variant	1	B127
`Chr8:23318754`	`AT`	`A`	1bp_deletion	CDS_variant	1	B127
`Chr8:23319705`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B15,B41,C15
`Chr8:23321407`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C27
`Chr8:23321642`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B51,B90,B92
`Chr8:23322590`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B120,C41
`Chr8:23322815`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B132,C65
`Chr8:23322947`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C7
`Chr8:23322985`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C75
`Chr8:23323065`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A13,B18

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784614.1

820 aa

410

820

Nucleolin_bd

TIP49

AAA_5

AAA

AAA_lid_3

AAA

AAA_lid_3

PF16725 Nucleolin_bd 28-74 aa PF06068 TIP49 279-333 aa PF07728 AAA_5 280-415 aa PF00004 AAA 280-426 aa PF17862 AAA_lid_3 450-485 aa PF00004 AAA 586-715 aa PF17862 AAA_lid_3 737-776 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057784614.1`	Pfam	`PF16725`	Nucleolin_bd	Domain	28	74	1.5e-08	35.0	Nucleolin binding domain
`XP_057784614.1`	Pfam	`PF06068`	TIP49	Domain	279	333	3.5e-10	40.3	TIP49 P-loop domain
`XP_057784614.1`	Pfam	`PF07728`	AAA_5	Domain	280	415	1.3e-11	45.4	AAA domain (dynein-related subfamily)
`XP_057784614.1`	Pfam	`PF00004`	AAA	Domain	280	426	4.6e-86	286.6	ATPase family associated with various cellular activities (AAA)
`XP_057784614.1`	Pfam	`PF17862`	AAA_lid_3	Domain	450	485	2.2e-19	69.3	AAA+ lid domain
`XP_057784614.1`	Pfam	`PF00004`	AAA	Domain	586	715	4.6e-86	286.6	ATPase family associated with various cellular activities (AAA)
`XP_057784614.1`	Pfam	`PF17862`	AAA_lid_3	Domain	737	776	2.2e-19	69.3	AAA+ lid domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057928631.1
TACTTAAATTTATAAAATAAAATATTTTTCATATAGTACAACATAAGAAATAAAACATTTTTGTCTATTAACACTTTATTTTTTTATCAAACTTCCAAAGTTCCGTCTCTAAAAAAAAAATAAAAAAAATCCTAAATTATAATCTAAAACCCTACTTCTAACACGAAACGCCCTTTCCTTCCAGCAACCACCGATGGGAAGGCGACGCGGCGGCGGCGGCGGCAGCGGTGGAAAACCGCATTCGAACAATGACCGAATTC...

CDS

1 records

下载 CDS FASTA

LOC131001969
ATGGGAAGGCGACGCGGCGGCGGCGGCGGCAGCGGTGGAAAACCGCATTCGAACAATGACCGAATTCTCCGGCGCCACATTGAAGCCGCCGGGAAAAACTACTCGACCGTTGACGAGCTGGTGGACCACCTCCGCTCCTCCTACCCGCACTACGCCCGCCACAAGCTTCGGCCTTTCACGAAGCAGGTGGAAAGAGTGTTTACGGTTTACAGCAAAAACAACGACACCATGGACGACTACAACGACGACGGCGATACTCC...

Protein

1 records

下载 Protein FASTA

XP_057784614.1
MGRRRGGGGGSGGKPHSNNDRILRRHIEAAGKNYSTVDELVDHLRSSYPHYARHKLRPFTKQVERVFTVYSKNNDTMDDYNDDGDTPIMIKRRKIDDKEEKLQLIEAEHLRRRSGDNSGGCSSSSLASSGSSGGGGSSDEEESTSEDAVYGEKFEPEFDLMKSMMREDLRRKSKKLEKGRAVNNEAVELEVVDNKGTKEVHLMNEESKLGDSVNKNYRKKLDKNDRNNNGGNDGNVINGPMFKDLGGISEVIEELKMEVI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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