Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002468`

染色体: Chr08 坐标: 23585099-23590436 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002468`
名称	SmilChr08G002468
描述	protein ENHANCED DISEASE RESISTANCE 2-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	23585099 - 23590436 / `-`

ID 对照

NCBI Gene ID	`LOC131001983`
GeneID	`131001983`
locus_tag	`-`
NCBI Name	`LOC131001983`
原始查询	`SmilChr08G002468`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein ENHANCED DISEASE RESISTANCE 2-like
产物	protein ENHANCED DISEASE RESISTANCE 2-like
Arabidopsis	`AT2G28320` (AT2G28320) Pleckstrin homology (PH) and lipid-binding START domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:817379] identity=62.2; qcov=1.02; evalue=0; confidence=high
Rice	`Os02g0102800` (B1370C05.34-1) - identity=32.2; qcov=1.03; evalue=1.09e-117; confidence=low
GO	GO:0008289 (lipid binding)
KEGG	-
Pfam	PF00169 (PH); PF01852 (START); PF07059 (EDR2_C)
InterPro	-
eggNOG	-
NR	GeneID:131001983

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	0.40000	`XP_057784638.1`
2	Cytoplasm	细胞质	0.20000	`XP_057784638.1`
3	Cytosol	细胞质基质	0.20000	`XP_057784638.1`
4	Trans-golgi network	Trans-golgi network	0.20000	`XP_057784638.1`
5	Nucleus	细胞核	0.00000	`XP_057784638.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:23585460`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B119,B72,C26
`Chr8:23585461`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B115,C39,C45,C80,D4
`Chr8:23585485`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C81
`Chr8:23585836`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:23586504`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B66,B8
`Chr8:23586931`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B26,B44
`Chr8:23587360`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A23
`Chr8:23588006`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:23588051`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B38,B39,B76,C53
`Chr8:23588064`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D9
`Chr8:23588084`	`A`	`AG`	1bp_insertion	frameshift_variant	1	A20
`Chr8:23588084`	`A`	`AG`	1bp_insertion	CDS_variant	1	A20

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784638.1

717 aa

358

717

START

EDR2_C

PF00169 PH 7-111 aa PF01852 START 196-329 aa PF07059 EDR2_C 499-706 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057784638.1`	Pfam	`PF00169`	PH	Domain	7	111	4e-09	37.6	PH domain
`XP_057784638.1`	Pfam	`PF01852`	START	Domain	196	329	3.2e-20	73.1	START domain
`XP_057784638.1`	Pfam	`PF07059`	EDR2_C	Domain	499	706	1e-73	248.5	Protein ENHANCED DISEASE RESISTANCE 2, C-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057928655.1
TCCAAAAACGACAGAAGAGAATAAAATAAAACGAAGACAAAAAAATAATAAAATAATAAAAAAGAAAAAAGAACAAAAAAAAAAAAAGTTGAGAAATTTAGCAGTTCTGAAAAAATTTGAAGAAGTTGTCGGAGTTTTAAAACTACGATTCTCTGAATCCCATTTGTGGGATCAGAGGATCATCCCTCCAAAAATAGTCTCTTCTTTCGTCGGGAAAAAATCTGCATGTTTACACAGTTGGTTTTATTTTGAGTGAAGTA...

CDS

1 records

下载 CDS FASTA

LOC131001983
ATGGCAGGAAGCGAAGGGAAAATGCAGGGATGGCTGTATTTGATTCGTTACAATAGATTTGGGCTTCAGTATTCGCGTAAGAGATATTTCATTCTTGAAGACAACTGCCTCAAGAGGTTCAAATCGGTTCCCACTTCCGATGCGGAGGAGCCTATGCGAAGTGCAATAATAGACTCATGCATTCGTGTTGTCGACAATGGAAGAGAGAGCCATCGTAGAAAATTATTTTTCATTTTTACCCTTTACAATACCTCTAACCA...

Protein

1 records

下载 Protein FASTA

XP_057784638.1
MAGSEGKMQGWLYLIRYNRFGLQYSRKRYFILEDNCLKRFKSVPTSDAEEPMRSAIIDSCIRVVDNGRESHRRKLFFIFTLYNTSNHRDRLKLGVTSSEEAARWIRALQDAALNPGKDLESCSDERKWQPFTMSVSKRMENKSSIDWTATSMQVNTKTSDVVAPASWKIFGCQNGLRLFKEAKERDPTGKEWDEHPAIMSVAVIDGTPEAVFRTIMSIGTSRNEWDFTFCRGTVVEHLDGHTDIVHLQLNNHWLPWAMKR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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