当前解析结果
SmilChr08G002471| 统一新 Gene ID | SmilChr08G002471 |
|---|---|
| 名称 | SmilChr08G002471 |
| 描述 | receptor-like protein 33 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 23611056 - 23612099 / + |
| NCBI Gene ID | LOC130998215 |
|---|---|
| GeneID | 130998215 |
| locus_tag | - |
| NCBI Name | LOC130998215 |
| 原始查询 | SmilChr08G002471 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | receptor-like protein 33 |
| 产物 | receptor-like protein 33 |
| Arabidopsis | AT3G05660 (RLP33)receptor like protein 33 [Source:NCBI gene (formerly Entrezgene);Acc:819733] identity=40.72; qcov=0.931; evalue=1.13e-66; confidence=medium |
| Rice | Os04g0480500- identity=42.94; qcov=0.914; evalue=7.78e-66; confidence=medium |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF13516 (LRR_6); PF13855 (LRR_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998215 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:23611105 |
AT |
A |
1bp_deletion | frameshift_variant | 6 | A11,A3,B57,B99,C87,D7 |
Chr8:23611124 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B26,C82,D10,D11 |
Chr8:23611189 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B26 |
Chr8:23611191 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B119,B72,C26 |
Chr8:23611218 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B61,B65,C17,C48 |
Chr8:23611316 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C87 |
Chr8:23611405 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B130 |
Chr8:23611432 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B119,B72,C26 |
Chr8:23611589 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D8 |
Chr8:23611777 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B71 |
Chr8:23611779 |
C |
T |
EMS_canonical_SNV | stop_gained | 43 | A10,A13,A21,B103,B110,B128,B133,B137,B18,B20,B28,B34,B45,B56,B58,B64,B65,B72,B77,B8,B81,B86,B88,B9,B90,B92,B96,B97,C1,C11,C13,C14,C18,C39,C53,C54,C6,C69,C78,C83,C84,C85,D11 |
Chr8:23611813 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B63 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057779628.1PF00560
LRR_1 2-18 aa
PF00560
LRR_1 24-45 aa
PF00560
LRR_1 153-172 aa
PF13855
LRR_8 174-233 aa
PF00560
LRR_1 175-196 aa
PF13516
LRR_6 197-211 aa
PF00560
LRR_1 198-220 aa
PF00560
LRR_1 223-240 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057779628.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 2 | 18 | 5.4e-23 | 76.8 | Leucine Rich Repeat |
XP_057779628.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 24 | 45 | 5.4e-23 | 76.8 | Leucine Rich Repeat |
XP_057779628.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 153 | 172 | 5.4e-23 | 76.8 | Leucine Rich Repeat |
XP_057779628.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 174 | 233 | 3.3e-17 | 62.7 | Leucine rich repeat |
XP_057779628.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 175 | 196 | 5.4e-23 | 76.8 | Leucine Rich Repeat |
XP_057779628.1 |
Pfam | PF13516 |
LRR_6 | Repeat | 197 | 211 | 7.5e-09 | 35.7 | Leucine Rich repeat |
XP_057779628.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 198 | 220 | 5.4e-23 | 76.8 | Leucine Rich Repeat |
XP_057779628.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 223 | 240 | 5.4e-23 | 76.8 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。