Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及有 accession 序列支持的文献基因名查询；未闭环名称仅提供候选导航。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002475`

染色体: Chr08 坐标: 23669710-23673270 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002475`
名称	SmilChr08G002475
描述	uncharacterized SmilChr08G002475
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	23669710 - 23673270 / `-`

ID 对照

NCBI Gene ID	`LOC131001990`
GeneID	`131001990`
locus_tag	`-`
NCBI Name	`LOC131001990`
原始查询	`SmilChr08G002475`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Outer membrane OMP85 family protein [Source:NCBI gene (formerly Entrezgene);Acc:830435]; symbol=AT5G05520; hit=AT5G05520; species=arabidopsis; confidence=high
产物	Outer membrane OMP85 family protein [Source:NCBI gene (formerly Entrezgene);Acc:830435]; symbol=AT5G05520; hit=AT5G05520; species=arabidopsis; confidence=high
Arabidopsis	`AT5G05520` (AT5G05520) Outer membrane OMP85 family protein [Source:NCBI gene (formerly Entrezgene);Acc:830435] identity=62.29; qcov=0.899; evalue=0.0; confidence=high
Rice	`Os05g0470800` - identity=61.22; qcov=0.91; evalue=0.0; confidence=high
GO	GO:0001401 (SAM complex); GO:0019867 (outer membrane); GO:0045040 (protein insertion into mitochondrial outer membrane)
KEGG	-
Pfam	PF01103 (Omp85); PF07244 (POTRA)
InterPro	-
eggNOG	-
NR	GeneID:131001990

打开注释模块

非零投票定位候选（最多五项）

Rank	定位位置	中文	五折投票比例	Protein ID
1	Chloroplast membrane	叶绿体膜	0.80000	`XP_057784643.1`
2	Mitochondrion	线粒体	0.40000	`XP_057784643.1`
3	Chloroplast	叶绿体	0.40000	`XP_057784643.1`
4	Peroxisome	过氧化物酶体	0.40000	`XP_057784643.1`
5	Mitochondrion membrane	线粒体膜	0.20000	`XP_057784644.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:23670824`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B1,C85
`Chr8:23671494`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B99,C87
`Chr8:23671971`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B12,C49,C73
`Chr8:23672591`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B72
`Chr8:23672623`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr8:23672652`	`GC`	`G`	1bp_deletion	frameshift_variant	1	C58
`Chr8:23672652`	`GC`	`G`	1bp_deletion	CDS_variant	1	C58
`Chr8:23672701`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C58

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784643.1

524 aa

262

524

POTRA

Omp85

PF07244 POTRA 70-149 aa PF01103 Omp85 177-496 aa

XP_057784644.1

523 aa

262

523

POTRA

Omp85

PF07244 POTRA 70-149 aa PF01103 Omp85 177-518 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057784643.1`	Pfam	`PF07244`	POTRA	Domain	70	149	3.4e-08	34.8	Surface antigen variable number repeat
`XP_057784643.1`	Pfam	`PF01103`	Omp85	Domain	177	496	9e-24	85.3	Omp85 superfamily domain
`XP_057784644.1`	Pfam	`PF07244`	POTRA	Domain	70	149	3.4e-08	34.8	Surface antigen variable number repeat
`XP_057784644.1`	Pfam	`PF01103`	Omp85	Domain	177	518	3e-30	106.6	Omp85 superfamily domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057928661.1
TCTTAACAATTAAAAGAGCAAGGGCCAATTCAATTTTTCTTTTTGAAAATACAGTAAATAAATATGCATCTCTCCAAAAAGAAATCCCAAGCTAACTACGACGTCGTACCGGTGCTTTCATTTCCCTAGAAATCCCGCCTCGCCGCCGCTGATCGCCGCCGCTCGTTTCTCTTCTCCTCACTCCACATTACACTCCGACGAGCAACCACCACTCCGTCCATGGAAGCCCAGCCTGAATCCGACCCGAAAACCAACCGAGC...

XM_057928660.1
TTTTTGAAAATACAGTAAATAAATATGCATCTCTCCAAAAAGAAATCCCAAGCTAACTACGACGTCGTACCGGTGCTTTCATTTCCCTAGAAATCCCGCCTCGCCGCCGCTGATCGCCGCCGCTCGTTTCTCTTCTCCTCACTCCACATTACACTCCGACGAGCAACCACCACTCCGTCCATGGAAGCCCAGCCTGAATCCGACCCGAAAACCAACCGAGCGGAGAACCCGAAGCCCGACTACGAAGAAATCGAAGATGA...

CDS

2 records

下载 CDS FASTA

lcl|NC_080394.1_cds_XP_057784644.1_43572
ATGGAAGCCCAGCCTGAATCCGACCCGAAAACCAACCGAGCGGAGAACCCGAAGCCCGACTACGAAGAAATCGAAGATGATGAAGACGAAGACGACACGGAGCTGGAAGAAGACGACGACAACGAGAAAACAACGGATGCCCGAATGCAAAGGGACCGAGCCGACATGGACTCGCTATTCAGGCGCCTCTCGTCGGAGCGGGTTCCGGTTCGGGTTCACGACATAGTCGTCAAGGGAAACAGGAAGACGAAGGATTCCGT...

lcl|NC_080394.1_cds_XP_057784643.1_43573
ATGGAAGCCCAGCCTGAATCCGACCCGAAAACCAACCGAGCGGAGAACCCGAAGCCCGACTACGAAGAAATCGAAGATGATGAAGACGAAGACGACACGGAGCTGGAAGAAGACGACGACAACGAGAAAACAACGGATGCCCGAATGCAAAGGGACCGAGCCGACATGGACTCGCTATTCAGGCGCCTCTCGTCGGAGCGGGTTCCGGTTCGGGTTCACGACATAGTCGTCAAGGGAAACAGGAAGACGAAGGATTCCGT...

Protein

2 records

下载 Protein FASTA

XP_057784643.1
MEAQPESDPKTNRAENPKPDYEEIEDDEDEDDTELEEDDDNEKTTDARMQRDRADMDSLFRRLSSERVPVRVHDIVVKGNRKTKDSVIEAEVETLFRDANSFQQLLRAAGVAKLRLHRLGIFDSVSITLDAGPPELPGTANVVIDVSEGSLLSGDFGVYSKPEARSWSLEAAARLKNLLGYGDLWDGSLAYGWGQSLEISSGVALPRFKSIPTPVSGRISLLSQDWLKFSSYKERALGLSLSLLSTGNHDLSYNLSWRTL...

XP_057784644.1
MEAQPESDPKTNRAENPKPDYEEIEDDEDEDDTELEEDDDNEKTTDARMQRDRADMDSLFRRLSSERVPVRVHDIVVKGNRKTKDSVIEAEVETLFRDANSFQQLLRAAGVAKLRLHRLGIFDSVSITLDAGPPELPGTANVVIDVSEGSLLSGDFGVYSKPEARSWSLEAAARLKNLLGYGDLWDGSLAYGWGQSLEISSGVALPRFKSIPTPVSGRISLLSQDWLKFSSYKERALGLSLSLLSTGNHDLSYNLSWRTL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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