当前解析结果
SmilChr08G002478| 统一新 Gene ID | SmilChr08G002478 |
|---|---|
| 名称 | SmilChr08G002478 |
| 描述 | probable inactive receptor-like protein kinase At3g56050 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 23688814 - 23692846 / - |
| NCBI Gene ID | LOC131001993 |
|---|---|
| GeneID | 131001993 |
| locus_tag | - |
| NCBI Name | LOC131001993 |
| 原始查询 | SmilChr08G002478 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable inactive receptor-like protein kinase At3g56050 |
| 产物 | probable inactive receptor-like protein kinase At3g56050 |
| Arabidopsis | AT4G18640 (MRH1)Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:827598] identity=42; qcov=1.05; evalue=3.28e-162; confidence=medium |
| Rice | Os01g0206800- identity=41.4; qcov=1.02; evalue=1.12e-154; confidence=medium |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001993 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057784647.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057784647.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057784647.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057784647.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057784647.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:23689081 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B120,B90,B92,C41 |
Chr8:23689093 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B70 |
Chr8:23689108 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | D10,D7 |
Chr8:23689207 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B108,B67,B7,C33 |
Chr8:23689360 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B100,B12,C23 |
Chr8:23689441 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C27,C37,D11 |
Chr8:23689462 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B26 |
Chr8:23689464 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr8:23689535 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B99,C87 |
Chr8:23690055 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B133,B140,B45,B74,C73 |
Chr8:23690102 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C62 |
Chr8:23690130 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B117,B27 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057784647.1PF08263
LRRNT_2 31-74 aa
PF07714
PK_Tyr_Ser-Thr 369-515 aa
PF00069
Pkinase 370-514 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057784647.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 31 | 74 | 2.8e-11 | 44.2 | Leucine rich repeat N-terminal domain |
XP_057784647.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 369 | 515 | 1.6e-20 | 74.2 | Protein tyrosine and serine/threonine kinase |
XP_057784647.1 |
Pfam | PF00069 |
Pkinase | Domain | 370 | 514 | 4.6e-16 | 59.7 | Protein kinase domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。