Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002481`

染色体: Chr08 坐标: 23714627-23719944 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002481`
名称	SmilChr08G002481
描述	sister chromatid cohesion 1 protein 1
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	23714627 - 23719944 / `-`

ID 对照

NCBI Gene ID	`LOC131001996`
GeneID	`131001996`
locus_tag	`-`
NCBI Name	`LOC131001996`
原始查询	`SmilChr08G002481`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	sister chromatid cohesion 1 protein 1
产物	sister chromatid cohesion 1 protein 1
Arabidopsis	`AT5G05490` (SYN1) Rad21/Rec8-like family protein [Source:NCBI gene (formerly Entrezgene);Acc:830432] identity=45.9; qcov=1.03; evalue=6.44e-168; confidence=high
Rice	`Os05g0580500` (OsRad21-4) - identity=49.2; qcov=0.588; evalue=1.63e-105; confidence=medium
GO	GO:0000795 (synaptonemal complex); GO:0003682 (chromatin binding); GO:0005515 (protein binding); GO:0007064 (mitotic sister chromatid cohesion); GO:0007130 (synaptonemal complex assembly); GO:0008278 (cohesin complex); GO:1990414 (replication-born double-strand break repair via sister chromatid exchange)
KEGG	-
Pfam	PF04824 (Rad21_Rec8); PF04825 (Rad21_Rec8_N)
InterPro	-
eggNOG	-
NR	GeneID:131001996

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057784648.1`
2	Chromosome	染色体	1.00000	`XP_057784648.1`
3	Centromere	着丝粒	0.80000	`XP_057784648.1`
4	Nucleoplasm	核质	0.40000	`XP_057784648.1`
5	Chromatin	染色质	0.00000	`XP_057784648.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:23714894`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B70,D11
`Chr8:23714921`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B131
`Chr8:23715408`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr8:23715865`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr8:23716153`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr8:23716445`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B115,C39,C45,C80,D4
`Chr8:23717901`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:23718265`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B115,D11
`Chr8:23718290`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A10,A7,B135,C33
`Chr8:23718604`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B88,C37
`Chr8:23719811`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784648.1

635 aa

318

635

Rad21_Rec8_N

Rad21_Rec8

PF04825 Rad21_Rec8_N 1-103 aa PF04824 Rad21_Rec8 582-635 aa

XP_057784649.1

634 aa

317

634

Rad21_Rec8_N

Rad21_Rec8

PF04825 Rad21_Rec8_N 1-103 aa PF04824 Rad21_Rec8 581-634 aa

XP_057784651.1

634 aa

317

634

Rad21_Rec8_N

Rad21_Rec8

PF04825 Rad21_Rec8_N 1-103 aa PF04824 Rad21_Rec8 581-634 aa

XP_057784652.1

633 aa

316

633

Rad21_Rec8_N

Rad21_Rec8

PF04825 Rad21_Rec8_N 1-103 aa PF04824 Rad21_Rec8 580-633 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057784648.1`	Pfam	`PF04825`	Rad21_Rec8_N	Family	1	103	1.9e-32	112.4	N terminus of Rad21 / Rec8 like protein
`XP_057784648.1`	Pfam	`PF04824`	Rad21_Rec8	Family	582	635	2.2e-19	69.2	Conserved region of Rad21 / Rec8 like protein
`XP_057784649.1`	Pfam	`PF04825`	Rad21_Rec8_N	Family	1	103	2e-32	112.3	N terminus of Rad21 / Rec8 like protein
`XP_057784649.1`	Pfam	`PF04824`	Rad21_Rec8	Family	581	634	2.2e-19	69.2	Conserved region of Rad21 / Rec8 like protein
`XP_057784651.1`	Pfam	`PF04825`	Rad21_Rec8_N	Family	1	103	1.8e-32	112.4	N terminus of Rad21 / Rec8 like protein
`XP_057784651.1`	Pfam	`PF04824`	Rad21_Rec8	Family	581	634	2.2e-19	69.2	Conserved region of Rad21 / Rec8 like protein
`XP_057784652.1`	Pfam	`PF04825`	Rad21_Rec8_N	Family	1	103	2e-32	112.3	N terminus of Rad21 / Rec8 like protein
`XP_057784652.1`	Pfam	`PF04824`	Rad21_Rec8	Family	580	633	2.2e-19	69.2	Conserved region of Rad21 / Rec8 like protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057928665.1
GCCTAAGCTCTCTCTCTCTCTCCCCTCCATTCGTTCAAAACTGTATAGCTGCGATTTGGTGCCGTCTCTGAGAATTCACCAAACAGATCAGGATGTTTTACTCTCATCAGCTTTTAGCTCGCAAAGCTCCTCTCGGACAAATATGGATGGCGGCGACGATGCATGCAAAGATCCACCGGCGAAAGCTAGACAAGCTTAATATTATCAAAATCTGCGAAGAGATTCTGAATCCTTCTGTTCCAATGGCTCTCAGACTTTCT...

XM_057928668.1
CCTAAGCTCTCTCTCTCTCTCCCCTCCATTCGTTCAAAACTGTATAGCTGCGATTTGGTGCCGTCTCTGAGAATTCACCAAACAGATCAGGATGTTTTACTCTCATCAGCTTTTAGCTCGCAAAGCTCCTCTCGGACAAATATGGATGGCGGCGACGATGCATGCAAAGATCCACCGGCGAAAGCTAGACAAGCTTAATATTATCAAAATCTGCGAAGAGATTCTGAATCCTTCTGTTCCAATGGCTCTCAGACTTTCTG...

CDS

4 records

下载 CDS FASTA

LOC131001996
ATGTTTTACTCTCATCAGCTTTTAGCTCGCAAAGCTCCTCTCGGACAAATATGGATGGCGGCGACGATGCATGCAAAGATCCACCGGCGAAAGCTAGACAAGCTTAATATTATCAAAATCTGCGAAGAGATTCTGAATCCTTCTGTTCCAATGGCTCTCAGACTTTCTGGGATTCTCATGGGTGGAGTTGTAATTGTTTACGAGAGAAAAGTAAAACTACTTTACGATGATGTAACCCGTCTGCTGGTGGAAATCAATGA...

Protein

4 records

下载 Protein FASTA

XP_057784648.1
MFYSHQLLARKAPLGQIWMAATMHAKIHRRKLDKLNIIKICEEILNPSVPMALRLSGILMGGVVIVYERKVKLLYDDVTRLLVEINEAWKVKSAPSDPTRLPKAKAQAKFASVTLPPNRNEDLGEVEESLPYSDTTTIMDFQQTSYFAMRLDNLDDPYLNQNLQGDQEQNHHQAEAANITLNDNYDSYQADTTTFNHFERFDVEGDGETQLNFTPPEHAGIPSIIPSPPRQEELPKSDEVPERHHEEQVKQQSAESKEAN...

XP_057784649.1
MFYSHQLLARKAPLGQIWMAATMHAKIHRRKLDKLNIIKICEEILNPSVPMALRLSGILMGGVVIVYERKVKLLYDDVTRLLVEINEAWKVKSAPSDPTRLPKAKAQAKFASVTLPPNRNEDLGEVEESLPYSDTTTIMDFQQTSYFAMRLDNLDDPYLNQNLQGDQEQNHHQAEAANITLNDNYDSYQADTTTFNHFERFDVEGDGETQLNFTPPEHAGIPSIIPSPPRQEELPKSDEVPERHHEEQVKQQSAESKEAN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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