Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002482`

染色体: Chr08 坐标: 23726676-23730900 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002482`
名称	SmilChr08G002482
描述	protein VAPYRIN-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	23726676 - 23730900 / `+`

ID 对照

NCBI Gene ID	`LOC131001997`
GeneID	`131001997`
locus_tag	`-`
NCBI Name	`LOC131001997`
原始查询	`SmilChr08G002482`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein VAPYRIN-like
产物	protein VAPYRIN-like
Arabidopsis	`AT2G31820` (AT2G31820) Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:817739] identity=30; qcov=0.599; evalue=2.19e-20; confidence=low
Rice	`Os01g0829100` - identity=42.5; qcov=0.985; evalue=1.38e-84; confidence=medium
GO	GO:0005515 (protein binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm)
KEGG	-
Pfam	PF00023 (Ank); PF00635 (Motile_Sperm); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13857 (Ank_5)
InterPro	-
eggNOG	-
NR	GeneID:131001997

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057784653.1`
2	Cytoplasm	细胞质	0.80000	`XP_057784653.1`
3	Nucleus	细胞核	0.40000	`XP_057784653.1`
4	Chromosome	染色体	0.00000	`XP_057784653.1`
5	Centromere	着丝粒	0.00000	`XP_057784653.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:23727371`	`AC`	`A`	1bp_deletion	frameshift_variant	1	B47
`Chr8:23727371`	`AC`	`A`	1bp_deletion	CDS_variant	1	B47
`Chr8:23727630`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	C30
`Chr8:23727630`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C30
`Chr8:23727635`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B52,C8
`Chr8:23727650`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B103,B6,C26,C3,C52
`Chr8:23727737`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr8:23727830`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr8:23727849`	`TG`	`T`	1bp_deletion	frameshift_variant	1	C84
`Chr8:23727849`	`TG`	`T`	1bp_deletion	CDS_variant	1	C84
`Chr8:23727871`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B108
`Chr8:23727878`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B12,C49,C73

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784653.1

456 aa

228

456

Motile_Sperm

Ank_4

Ank_2

Ank

Ank_4

Ank_3

Ank

Ank_4

Ank_2

Ank

Ank_4

Ank_5

Ank_3

Ank

Ank_4

PF00635 Motile_Sperm 24-111 aa PF13637 Ank_4 210-257 aa PF12796 Ank_2 210-298 aa PF00023 Ank 237-267 aa PF13637 Ank_4 244-290 aa PF13606 Ank_3 269-297 aa PF00023 Ank 269-300 aa PF00023 Ank 326-355 aa PF13637 Ank_4 331-377 aa PF12796 Ank_2 331-420 aa PF00023 Ank 357-388 aa PF13637 Ank_4 362-411 aa PF13857 Ank_5 377-428 aa PF13606 Ank_3 391-419 aa PF00023 Ank 391-421 aa PF13637 Ank_4 395-444 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057784653.1`	Pfam	`PF00635`	Motile_Sperm	Domain	24	111	2.7e-11	44.0	MSP (Major sperm protein) domain
`XP_057784653.1`	Pfam	`PF13637`	Ank_4	Repeat	210	257	1.7e-39	133.7	Ankyrin repeats (many copies)
`XP_057784653.1`	Pfam	`PF12796`	Ank_2	Repeat	210	298	8.9e-46	155.1	Ankyrin repeats (3 copies)
`XP_057784653.1`	Pfam	`PF00023`	Ank	Repeat	237	267	3.2e-45	150.3	Ankyrin repeat
`XP_057784653.1`	Pfam	`PF13637`	Ank_4	Repeat	244	290	1.7e-39	133.7	Ankyrin repeats (many copies)
`XP_057784653.1`	Pfam	`PF13606`	Ank_3	Repeat	269	297	2.4e-29	98.5	Ankyrin repeat
`XP_057784653.1`	Pfam	`PF00023`	Ank	Repeat	269	300	3.2e-45	150.3	Ankyrin repeat
`XP_057784653.1`	Pfam	`PF00023`	Ank	Repeat	326	355	3.2e-45	150.3	Ankyrin repeat
`XP_057784653.1`	Pfam	`PF13637`	Ank_4	Repeat	331	377	1.7e-39	133.7	Ankyrin repeats (many copies)
`XP_057784653.1`	Pfam	`PF12796`	Ank_2	Repeat	331	420	8.9e-46	155.1	Ankyrin repeats (3 copies)
`XP_057784653.1`	Pfam	`PF00023`	Ank	Repeat	357	388	3.2e-45	150.3	Ankyrin repeat
`XP_057784653.1`	Pfam	`PF13637`	Ank_4	Repeat	362	411	1.7e-39	133.7	Ankyrin repeats (many copies)
`XP_057784653.1`	Pfam	`PF13857`	Ank_5	Repeat	377	428	1.3e-23	83.5	Ankyrin repeats (many copies)
`XP_057784653.1`	Pfam	`PF13606`	Ank_3	Repeat	391	419	2.4e-29	98.5	Ankyrin repeat
`XP_057784653.1`	Pfam	`PF00023`	Ank	Repeat	391	421	3.2e-45	150.3	Ankyrin repeat
`XP_057784653.1`	Pfam	`PF13637`	Ank_4	Repeat	395	444	1.7e-39	133.7	Ankyrin repeats (many copies)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057928670.1
TCTGGCCCGAAGCATCCTCATCCTTTTGCAAGATTTGCTTGACAATACCAATCTCTCCTTCATTGGCTCAGCCAAAAATGATGGAGTCATCCGCAAAAAAGAGGTGACTAATTGACGGAGCAGTGCTACAAAGTTGGGTGTAAGCTAGATAAAGTCTCTGCACAAAAGAGAAAGAGATAAAGGTGAGAGCGGATCCCCTTAACAGAGACCGCCGCGCTCGTGCATGAAAGGAAAACCAGGCACACCATTAATCAATCAGC...

CDS

1 records

下载 CDS FASTA

LOC131001997
ATGGACAAACTAGTCCAAGTCTCCGACCAGGAGATCCTCATCGACTTCTCCCTGGGCTGCAAATGCCGCACCACCATCCGCCTCAAGTCCCTCATCTCCACCGCCCCACTAGCTTTCAAGGTCCAGACCTCCTCCCCTCACAAATTCCTCGTCAATCCCCCCACCGGCCTCGTCCCCCCGCTCTCCTCCGCCTCCTTCCAGATCGTCCTCAAGCCCCAGCCCCACCTCCCCTCTTCCTTCCCCCGCTCCCCCTCCGACCG...

Protein

1 records

下载 Protein FASTA

XP_057784653.1
MDKLVQVSDQEILIDFSLGCKCRTTIRLKSLISTAPLAFKVQTSSPHKFLVNPPTGLVPPLSSASFQIVLKPQPHLPSSFPRSPSDRFLLKTAAAPDLPDSTHSDLVNHWFASFPPRPTHDVKLKVYFVGPFLLAHAVAAGDFEAVRGIVKRQRSLVPELPLREAESLYRVAAQHPDIAGLLLEAGLRIDVVRGGVSDDVRWAAKGWAGLHVAAAFDRAEEVEQLVKDGVECRDKEGRTPLLLAAGKGHLRTAKVLVAAG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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