当前解析结果
SmilChr08G002489| 统一新 Gene ID | SmilChr08G002489 |
|---|---|
| 名称 | SmilChr08G002489 |
| 描述 | secreted RxLR effector protein 161-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 23799497 - 23800529 / + |
| NCBI Gene ID | LOC131002004 |
|---|---|
| GeneID | 131002004 |
| locus_tag | - |
| NCBI Name | LOC131002004 |
| 原始查询 | SmilChr08G002489 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | secreted RxLR effector protein 161-like |
| 产物 | secreted RxLR effector protein 161-like |
| Arabidopsis | AT4G23160 (CRK8)cysteine-rich RECEPTOR-like kinase [Source:NCBI gene (formerly Entrezgene);Acc:828415] identity=40.1; qcov=0.766; evalue=4.72e-33; confidence=medium |
| Rice | Os11g0656500- identity=49.2; qcov=0.953; evalue=9.35e-58; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131002004 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057784659.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057784659.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057784659.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057784659.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057784659.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:23799990 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A5,B14 |
Chr8:23799991 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C37 |
Chr8:23800079 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B83,C26 |
Chr8:23800080 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B83,C26 |
Chr8:23800090 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B65,C48 |
Chr8:23800100 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B9,C49,C59 |
Chr8:23800102 |
G |
GT |
1bp_insertion | frameshift_variant | 7 | B104,B113,B138,B44,B74,C40,D11 |
Chr8:23800122 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B19,C51 |
Chr8:23800167 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A1,B93,C5,C84 |
Chr8:23800172 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B108,B122,B56,B96 |
Chr8:23800176 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr8:23800184 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。