Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002490`

染色体: Chr08 坐标: 23802498-23809536 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002490`
名称	SmilChr08G002490
描述	uncharacterized SmilChr08G002490
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	23802498 - 23809536 / `-`

ID 对照

NCBI Gene ID	`LOC131002005`
GeneID	`131002005`
locus_tag	`-`
NCBI Name	`LOC131002005`
原始查询	`SmilChr08G002490`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	histidine acid phosphatase family protein [Source:NCBI gene (formerly Entrezgene);Acc:837519]; symbol=AT1G09870; hit=AT1G09870; species=arabidopsis; confidence=high
产物	histidine acid phosphatase family protein [Source:NCBI gene (formerly Entrezgene);Acc:837519]; symbol=AT1G09870; hit=AT1G09870; species=arabidopsis; confidence=high
Arabidopsis	`AT1G09870` (AT1G09870) histidine acid phosphatase family protein [Source:NCBI gene (formerly Entrezgene);Acc:837519] identity=65.2; qcov=0.963; evalue=0; confidence=high
Rice	`Os03g0818100` - identity=62.4; qcov=0.94; evalue=0; confidence=high
GO	GO:0003993 (acid phosphatase activity); GO:0052745 (inositol phosphate phosphatase activity)
KEGG	smil00010 (Glycolysis / Gluconeogenesis - Salvia miltiorrhiza (redroot sage)); smil00562 (Inositol phosphate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF00328 (His_Phos_2)
InterPro	-
eggNOG	-
NR	GeneID:131002005

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Secreted	分泌到胞外	0.60000	`XP_057784661.1`
2	Endoplasmic reticulum	内质网	0.60000	`XP_057784662.1`
3	Endoplasmic reticulum lumen	内质网腔	0.40000	`XP_057784662.1`
4	Golgi apparatus	高尔基体	0.20000	`XP_057784661.1`
5	Melanosome	Melanosome	0.20000	`XP_057784662.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:23802831`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B52,C8
`Chr8:23802914`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:23803758`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr8:23803759`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B12,C49,C73
`Chr8:23804853`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B15,B41,C15
`Chr8:23808041`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B99,C87
`Chr8:23808919`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784661.1

491 aa

246

491

His_Phos_2

PF00328 His_Phos_2 64-421 aa

XP_057784662.1

435 aa

218

435

His_Phos_2

PF00328 His_Phos_2 10-365 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057784661.1`	Pfam	`PF00328`	His_Phos_2	Family	64	421	5.8e-49	168.1	Histidine phosphatase superfamily (branch 2)
`XP_057784662.1`	Pfam	`PF00328`	His_Phos_2	Family	10	365	1.9e-48	166.4	Histidine phosphatase superfamily (branch 2)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057928678.1
CATACGCACGCTACTGATACAAAAAGTACGCACACCAAAACTAAAACGACACCTTCTCGACCACCCAACGCAGGTTGCAGCAGCCATGGCCGCGTCTCCGAAGGTTGCATTACTCCTACTTACATTTTTTCACGCAGCTTCCGTTCTAGCCAATGCCAATCAAGATTTTGACGTTCGTCGCCATTTATCCACTGTTACCAGATATCATGTAGCGAAGGAAATATCTGAAAATTCAGTTGTTCCTTCAAACATTCCCGATC...

XM_057928679.1
ATATCATGTAGCGAAGGAAATATCTGAAAATTCAGTTGTTCCTTCAAACATTCCCGATCAGTGTAAACCTATTCACTTAAATCTTGTGTACTTTAGCCTGTAATGGAAGTACAGATGAAGGGGAAAGCTTAGTTTTCTACTACATTTGAGCATCTAAGTTCTTTACCATGCCATGGCAGAGGGAATATGTGAGACATTACATTGCAAGACATGGGACTCGGGCTCCTACTAAGAAAAAAATGAAGGTACTGGATGCCTTG...

CDS

2 records

下载 CDS FASTA

LOC131002005
ATGGCCGCGTCTCCGAAGGTTGCATTACTCCTACTTACATTTTTTCACGCAGCTTCCGTTCTAGCCAATGCCAATCAAGATTTTGACGTTCGTCGCCATTTATCCACTGTTACCAGATATCATGTAGCGAAGGAAATATCTGAAAATTCAGTTGTTCCTTCAAACATTCCCGATCAGTGTAAACCTATTCACTTAAATCTTGTGGCAAGACATGGGACTCGGGCTCCTACTAAGAAAAAAATGAAGGTACTGGATGCCTT...

LOC131002005
ATGCCATGGCAGAGGGAATATGTGAGACATTACATTGCAAGACATGGGACTCGGGCTCCTACTAAGAAAAAAATGAAGGTACTGGATGCCTTGGGAACTCGCTTAGAAGTCCTTTCAGGAAACGTTAAAGAAAAGAAGTCAGGAGCGCTACCTGCATGGTTACGGGGATGGAAATCGCCTTGGACTGGAAAGCATAAAGGTGGAGAGTTGATTAGCTTAGGAGAAAGTGAACTGTATGAGCTCGGTATCAGAGTCAGAGA...

Protein

2 records

下载 Protein FASTA

XP_057784661.1
MAASPKVALLLLTFFHAASVLANANQDFDVRRHLSTVTRYHVAKEISENSVVPSNIPDQCKPIHLNLVARHGTRAPTKKKMKVLDALGTRLEVLSGNVKEKKSGALPAWLRGWKSPWTGKHKGGELISLGESELYELGIRVREKFPQLFHEDYHPDIYPIKATQVSRASASAVAFGMGLFSDRGNLGPGRHRAFAVISESRASDIMLRFHDCCQNYKAFRKSQEPSVDKLKEPILDEITKELVKRWGLSFTRQDVSSLWF...

XP_057784662.1
MPWQREYVRHYIARHGTRAPTKKKMKVLDALGTRLEVLSGNVKEKKSGALPAWLRGWKSPWTGKHKGGELISLGESELYELGIRVREKFPQLFHEDYHPDIYPIKATQVSRASASAVAFGMGLFSDRGNLGPGRHRAFAVISESRASDIMLRFHDCCQNYKAFRKSQEPSVDKLKEPILDEITKELVKRWGLSFTRQDVSSLWFLCKQEASLLNKTDQACALFSPSEIGLLEWTDDLEVFIVKGYGNSLNYRMGVPLLED...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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