Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002493`

染色体: Chr08 坐标: 23892060-23898186 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002493`
名称	SmilChr08G002493
描述	cytosolic endo-beta-N-acetylglucosaminidase 1
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	23892060 - 23898186 / `-`

ID 对照

NCBI Gene ID	`LOC131002008`
GeneID	`131002008`
locus_tag	`-`
NCBI Name	`LOC131002008`
原始查询	`SmilChr08G002493`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	cytosolic endo-beta-N-acetylglucosaminidase 1
产物	cytosolic endo-beta-N-acetylglucosaminidase 1
Arabidopsis	`AT5G05460` (ENGase85A) Glycosyl hydrolase family 85 [Source:NCBI gene (formerly Entrezgene);Acc:830429] identity=49.6; qcov=1.01; evalue=0; confidence=high
Rice	`Os05g0346500` - identity=47.3; qcov=1.01; evalue=3.45e-172; confidence=high
GO	GO:0005737 (cytoplasm); GO:0006517 (protein deglycosylation); GO:0033925 (mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity)
KEGG	smil00511 (Other glycan degradation - Salvia miltiorrhiza (redroot sage))
Pfam	PF03644 (Glyco_hydro_85); PF25529 (Ig_ENGASE1_C)
InterPro	-
eggNOG	-
NR	GeneID:131002008

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057784666.1`
2	Cytoplasm	细胞质	0.80000	`XP_057784667.1`
3	Nucleus	细胞核	0.00000	`XP_057784666.1`
4	Chromosome	染色体	0.00000	`XP_057784666.1`
5	Centromere	着丝粒	0.00000	`XP_057784666.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:23892332`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B34,C36
`Chr8:23892504`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:23892560`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B12,C49,C73
`Chr8:23892601`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C27
`Chr8:23892677`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B104,D11
`Chr8:23892899`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B131
`Chr8:23893198`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B24
`Chr8:23894064`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr8:23894072`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	C27
`Chr8:23894072`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C27
`Chr8:23894114`	`CAT`	`C`	2bp_deletion	frameshift_variant	6	A6,B10,B103,B105,B62,D4
`Chr8:23894373`	`G`	`A`	EMS_canonical_SNV	stop_gained	10	B115,B129,B132,B22,B43,B72,B93,B97,C3,C81

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784666.1

711 aa

356

711

Glyco_hydro_85

Ig_ENGASE1_C

PF03644 Glyco_hydro_85 108-384 aa PF25529 Ig_ENGASE1_C 594-709 aa

XP_057784667.1

547 aa

274

547

Glyco_hydro_85

Ig_ENGASE1_C

PF03644 Glyco_hydro_85 1-220 aa PF25529 Ig_ENGASE1_C 430-545 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057784666.1`	Pfam	`PF03644`	Glyco_hydro_85	Family	108	384	1.6e-101	340.4	Glycosyl hydrolase family 85
`XP_057784666.1`	Pfam	`PF25529`	Ig_ENGASE1_C	Domain	594	709	2.5e-29	102.4	ENGASE1-like, C-terminal immunoglobulin-like domain
`XP_057784667.1`	Pfam	`PF03644`	Glyco_hydro_85	Family	1	220	1.1e-70	239.2	Glycosyl hydrolase family 85
`XP_057784667.1`	Pfam	`PF25529`	Ig_ENGASE1_C	Domain	430	545	1.6e-29	103.1	ENGASE1-like, C-terminal immunoglobulin-like domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057928683.1
AAAACCCAGCTGGTAATAAATGGCAATATTCCGTCTTTAATTGAAGCACCAAAATAAAGAAACGGCGTCTTGATTGTAGTCTTGTAGAGAACAAGTGAAGTCGCTGGCATGGACTCACAACAAGATGCCATTCCTCCTCCACTATATAAAATCCCATCACCCCAAAGCCTACGCTGCCCTCAAGGATCTCCGCTCCTTCCTATCAACTCTTCTAATGGCAGACACTTCCTCCTCCTCCGCCGATCCTCCGCCGCCTTTTG...

XM_057928684.1
TGATATTATTGTCTTCTCTACAACGAAAAATCATAATAAAGAAATAAAAAAATTGTTTTTCTGCCTGTTATTTAGCTGATGATTCCTAAAAGGTGTGGTTTTCAAATAAAATCCACAATCTAGAGTTTCTCAATGCAGATCATCTTTGACAAAATGTGGTATTAGGGACTTTTATCATGGAATGGGATGAAGGGAAAATACGTGCTGATAAACTATTAGCGTCAAAGGATTCTCTTCGAATGTATGCTGACCGATTGACG...

CDS

2 records

下载 CDS FASTA

LOC131002008
ATGCCATTCCTCCTCCACTATATAAAATCCCATCACCCCAAAGCCTACGCTGCCCTCAAGGATCTCCGCTCCTTCCTATCAACTCTTCTAATGGCAGACACTTCCTCCTCCTCCGCCGATCCTCCGCCGCCTTTTGATCCGCTAAAGCCGGCTCCTCCTGTCTCCTACCCGCTGCAGACGCTCGAGGAATTGGAGTCCCGAGCTTATTTCAAATCCTTCCATTACCCCTTCAACAAGGCCGCCGTGAAGCTGCCGGCCTC...

LOC131002008
ATGGAATGGGATGAAGGGAAAATACGTGCTGATAAACTATTAGCGTCAAAGGATTCTCTTCGAATGTATGCTGACCGATTGACGGAGCTTGCTGTTGCTCTAGGCTTTGATGGTTGGCTGCTCAATATGGAAGTCACTTTGGATCCTGGACAAATCCCTAACCTGAAAGAATTTGTCAGCTATTTAAGCCTGACCATGCACTCCTCGCTACCTGGGTCTTTGGTTATATGGTATGACAGTGTCACTGTTGATGGTGAACT...

Protein

2 records

下载 Protein FASTA

XP_057784666.1
MPFLLHYIKSHHPKAYAALKDLRSFLSTLLMADTSSSSADPPPPFDPLKPAPPVSYPLQTLEELESRAYFKSFHYPFNKAAVKLPASTAGLPKRPRTLVCHDMAGGYTDDKLVQGGANAEAFAIWHWYLIDVFVYFSHNLVTLPPPCWTNTAHRHGVKVLGTFIMEWDEGKIRADKLLASKDSLRMYADRLTELAVALGFDGWLLNMEVTLDPGQIPNLKEFVSYLSLTMHSSLPGSLVIWYDSVTVDGELIWQNQLNDK...

XP_057784667.1
MEWDEGKIRADKLLASKDSLRMYADRLTELAVALGFDGWLLNMEVTLDPGQIPNLKEFVSYLSLTMHSSLPGSLVIWYDSVTVDGELIWQNQLNDKNKPFFDLCDGIFVNYSWEEDYPKLSAKVAADRNLDVYMGIDVFGRSTYGGGQWTTNVALDVIKKGDVSAAIFAPGWVYETQQPPDFQTAQNRWWGLVEKSWGIVRNYPKVLPFYSNFDQGHGYHIYSDGKQIYSNQWNNLSSQSFQPFIKYSGESNTEPIKVSI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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