当前解析结果
SmilChr08G002499| 统一新 Gene ID | SmilChr08G002499 |
|---|---|
| 名称 | SmilChr08G002499 |
| 描述 | protein trichome birefringence-like 33 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 24026607 - 24028723 / + |
| NCBI Gene ID | LOC131002013 |
|---|---|
| GeneID | 131002013 |
| locus_tag | - |
| NCBI Name | LOC131002013 |
| 原始查询 | SmilChr08G002499 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein trichome birefringence-like 33 |
| 产物 | protein trichome birefringence-like 33 |
| Arabidopsis | AT2G40320 (TBL33)TRICHOME BIREFRINGENCE-LIKE 33 [Source:NCBI gene (formerly Entrezgene);Acc:818625] identity=75.06; qcov=0.974; evalue=0.0; confidence=high |
| Rice | Os03g0817900 (OsTBL5)- identity=61.41; qcov=0.976; evalue=0.0; confidence=high |
| GO | GO:0005794 (Golgi apparatus); GO:0016413 (O-acetyltransferase activity) |
| KEGG | - |
| Pfam | PF13839 (PC-Esterase); PF14416 (PMR5N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131002013 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:24026941 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr8:24027214 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B15,C15 |
Chr8:24027216 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B123,B124,B136,B99,C87 |
Chr8:24027283 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A18,B91 |
Chr8:24027371 |
C |
T |
EMS_canonical_SNV | stop_gained | 10 | A11,A2,B127,B65,B75,B82,C13,C17,C2,C59 |
Chr8:24027503 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B41,B90,B92 |
Chr8:24027750 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B107,B52 |
Chr8:24027767 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A19,B6,B8,C3 |
Chr8:24027772 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B16,B31,C1,C4 |
Chr8:24027788 |
G |
GT |
1bp_insertion | frameshift_variant | 1 | C4 |
Chr8:24027788 |
G |
GT |
1bp_insertion | CDS_variant | 1 | C4 |
Chr8:24027866 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A15 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057784672.1PF14416
PMR5N 75-127 aa
PF13839
PC-Esterase 128-414 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057784672.1 |
Pfam | PF14416 |
PMR5N | Domain | 75 | 127 | 9e-23 | 81.1 | PMR5 N terminal Domain |
XP_057784672.1 |
Pfam | PF13839 |
PC-Esterase | Family | 128 | 414 | 6.4e-89 | 299.4 | GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。