Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002507`

染色体: Chr08 坐标: 24124815-24131330 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002507`
名称	SmilChr08G002507
描述	SNF2 domain-containing protein CLASSY 1-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	24124815 - 24131330 / `-`

ID 对照

NCBI Gene ID	`LOC131002019`
GeneID	`131002019`
locus_tag	`-`
NCBI Name	`LOC131002019`
原始查询	`SmilChr08G002507`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	SNF2 domain-containing protein CLASSY 1-like
产物	SNF2 domain-containing protein CLASSY 1-like
Arabidopsis	`AT3G42670` (CHR38) chromatin remodeling 38 [Source:NCBI gene (formerly Entrezgene);Acc:823287] identity=58.9; qcov=0.605; evalue=0; confidence=high
Rice	`Os07g0692600` - identity=45; qcov=0.531; evalue=0; confidence=medium
GO	GO:0005524 (ATP binding); GO:0080188 (gene silencing by siRNA-directed DNA methylation); GO:0140658 (ATP-dependent chromatin remodeler activity)
KEGG	smil03440 (Homologous recombination - Salvia miltiorrhiza (redroot sage))
Pfam	PF00176 (SNF2-rel_dom); PF00271 (Helicase_C); PF04851 (ResIII)
InterPro	-
eggNOG	-
NR	GeneID:131002019

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057784680.1`
2	Chromosome	染色体	0.00000	`XP_057784680.1`
3	Centromere	着丝粒	0.00000	`XP_057784680.1`
4	Chromatin	染色质	0.00000	`XP_057784680.1`
5	Telomere	端粒	0.00000	`XP_057784680.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:24125206`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B128,B20,B70
`Chr8:24125383`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A15
`Chr8:24125655`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:24125728`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B48,B68
`Chr8:24125970`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C51
`Chr8:24125983`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A22,B38,B39
`Chr8:24126151`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A18,B91,C87
`Chr8:24126637`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B140,C82
`Chr8:24126799`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B128,B20
`Chr8:24126892`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B40,B60,B71,B8,D7
`Chr8:24126919`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr8:24127239`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B128,B20

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784680.1

1302 aa

651

1302

ResIII

SNF2-rel_dom

Helicase_C

PF04851 ResIII 711-919 aa PF00176 SNF2-rel_dom 729-951 aa PF00271 Helicase_C 1094-1212 aa

XP_057784681.1

1302 aa

651

1302

ResIII

SNF2-rel_dom

Helicase_C

PF04851 ResIII 711-919 aa PF00176 SNF2-rel_dom 729-951 aa PF00271 Helicase_C 1094-1212 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057784680.1`	Pfam	`PF04851`	ResIII	Family	711	919	3.8e-09	37.4	Type III restriction enzyme, res subunit
`XP_057784680.1`	Pfam	`PF00176`	SNF2-rel_dom	Domain	729	951	2.1e-20	73.8	SNF2-related domain
`XP_057784680.1`	Pfam	`PF00271`	Helicase_C	Domain	1094	1212	2.1e-15	57.6	Helicase conserved C-terminal domain
`XP_057784681.1`	Pfam	`PF04851`	ResIII	Family	711	919	3.8e-09	37.4	Type III restriction enzyme, res subunit
`XP_057784681.1`	Pfam	`PF00176`	SNF2-rel_dom	Domain	729	951	2.1e-20	73.8	SNF2-related domain
`XP_057784681.1`	Pfam	`PF00271`	Helicase_C	Domain	1094	1212	2.1e-15	57.6	Helicase conserved C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057928697.1
AATATATGGAATCGAAGCTTAAATAATTGAGACGAGCACGAGCCACAATCCAATGGATTCTTTCACAGACCGCAAAAGTCAAGAGAAAATGAACCCCTCCCCCTCTCTTACTCTGTGACTCCTCCGCCGTCCGATCAACCGAATCTCTCAATCTCACCCCGATTCCCAACGCCCTTTACTGCCTCTTTTTCCGGTTCCATGCAAAAAAGCCCGACATTTTTCACAAACTCCCAACAATTTTTCCCCTTTCTCTCTCTCTC...

XM_057928698.1
AATATATGGAATCGAAGCTTAAATAATTGAGACGAGCACGAGCCACAATCCAATGGATTCTTTCACAGACCGCAAAAGTCAAGAGAAAATGAACCCCTCCCCCTCTCTTACTCTGTGACTCCTCCGCCGTCCGATCAACCGAATCTCTCAATCTCACCCCGATTCCCAACGCCCTTTACTGCCTCTTTTTCCGGTTCCATGCAAAAAAGCCCGACATTTTTCACAAACTCCCAACAATTTTTCCCCTTTCTCTCTCTCTC...

CDS

2 records

下载 CDS FASTA

LOC131002019
ATGAAGAGGTTGCAGATACATCAAAGTAACCATCCATTTGATCCATATCCTTTTGAGGCTTTTCGGAATGGCTCATGGCAACCTGTGGAGCGCCTCAAAGTTAATGGTGGAGCTATCTCGACACATATTGTTGAAAATGGAGAGGTCATTGAGGAGGACCTTCCAATGTCGCATCTTCGTGTAAGGTCAAGAAGAGCTATTGTATCCGACTGCATATCCTTTTTAAGGCAAGGAGTTGATGTTTGTGTATTTTCTACATT...

Protein

2 records

下载 Protein FASTA

XP_057784680.1
MKRLQIHQSNHPFDPYPFEAFRNGSWQPVERLKVNGGAISTHIVENGEVIEEDLPMSHLRVRSRRAIVSDCISFLRQGVDVCVFSTFHNPEDSDDETSDEPVWVDARIRSIERKHDGASCNCEFYISFYVDQGPDLYLINKKLCKATTMVKINQISVLQKLEQKPYESQYYRWGSSEDCFSVQKFKLFSGIFCADMSWLIVASVLKQTAFDVRSMRNHIVYEVSEYSPDSGQADSPNHTYCVSFKVENNVLTPFVMQADL...

XP_057784681.1
MKRLQIHQSNHPFDPYPFEAFRNGSWQPVERLKVNGGAISTHIVENGEVIEEDLPMSHLRVRSRRAIVSDCISFLRQGVDVCVFSTFHNPEDSDDETSDEPVWVDARIRSIERKHDGASCNCEFYISFYVDQGPDLYLINKKLCKATTMVKINQISVLQKLEQKPYESQYYRWGSSEDCFSVQKFKLFSGIFCADMSWLIVASVLKQTAFDVRSMRNHIVYEVSEYSPDSGQADSPNHTYCVSFKVENNVLTPFVMQADL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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