Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G002514

染色体: Chr08 坐标: 24339221-24341687 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G002514
名称SmilChr08G002514
描述CBL-interacting protein kinase 2-like
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向24339221 - 24341687 / -

ID 对照

NCBI Gene IDLOC131002047
GeneID131002047
locus_tag-
NCBI NameLOC131002047
原始查询SmilChr08G002514

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述CBL-interacting protein kinase 2-like
产物CBL-interacting protein kinase 2-like
ArabidopsisAT5G58380 (SIP1)
SOS3-interacting protein 1 [Source:NCBI gene (formerly Entrezgene);Acc:835951]
identity=58.1; qcov=1.03; evalue=0; confidence=high
RiceOs07g0678600 (OsCIPK02)
-
identity=62.5; qcov=0.982; evalue=0; confidence=high
GOGO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0007165 (signal transduction)
KEGG-
PfamPF00069 (Pkinase); PF03822 (NAF); PF07714 (PK_Tyr_Ser-Thr); PF14531 (Kinase-like)
InterPro-
eggNOG-
NRGeneID:131002047

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytosol 细胞质基质 1.00000 XP_057784702.1
2 Cytoplasm 细胞质 0.60000 XP_057784702.1
3 Nucleus 细胞核 0.40000 XP_057784702.1
4 Cell membrane 细胞膜 0.20000 XP_057784702.1
5 Chromosome 染色体 0.00000 XP_057784702.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:24339637 C T EMS_canonical_SNV CDS_variant 1 B104
Chr8:24339662 C T EMS_canonical_SNV CDS_variant 1 B2
Chr8:24339692 G A EMS_canonical_SNV CDS_variant 1 C35
Chr8:24340238 G A EMS_canonical_SNV CDS_variant 2 B23,B77
Chr8:24340283 G A EMS_canonical_SNV CDS_variant 3 B125,C21,C36
Chr8:24340378 C T EMS_canonical_SNV CDS_variant 5 A21,B137,B86,C18,C54
Chr8:24340418 G A EMS_canonical_SNV CDS_variant 2 B52,C6
Chr8:24340457 C T EMS_canonical_SNV CDS_variant 2 B31,C3
Chr8:24340475 C T EMS_canonical_SNV CDS_variant 5 A16,B115,B99,C62,C84
Chr8:24340502 G A EMS_canonical_SNV CDS_variant 3 B122,B38,B39
Chr8:24340523 C T EMS_canonical_SNV CDS_variant 1 D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057784702.1
440 aa
N
1
220
440
Pkinase
PK_Tyr_Ser-Thr
Kinase-like
NAF
C
PF00069 Pkinase 16-270 aa PF07714 PK_Tyr_Ser-Thr 18-266 aa PF14531 Kinase-like 107-258 aa PF03822 NAF 307-359 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057784702.1 Pfam PF00069 Pkinase Domain 16 270 7.8e-77 258.9 Protein kinase domain
XP_057784702.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 18 266 2.1e-39 136.1 Protein tyrosine and serine/threonine kinase
XP_057784702.1 Pfam PF14531 Kinase-like Family 107 258 1.2e-08 35.2 Kinase-like
XP_057784702.1 Pfam PF03822 NAF Domain 307 359 2.3e-19 70.0 NAF domain

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XR_009094129.1
GCAAAAATGTGCTCACCTCAACATTACTCTCTTCTCTCTCTTGTGGCTTTGGATCCAACCGAACCGAAGCCCTCTTTGCTTCAATCTTCATCAAGAGGTTCTCCTTATTCTTCGACGACATCCAAACTCCCTAGGGATGCTGAAAGATGTATATTGTTGTTGAGGCTTCCACGTGGGCTGTTTGCAACATTTCGCCCAACGCATACCAACTATGGTTTCCTAAGGACTACAACGATTATATTGTGTA
XM_057928719.1
CAAAAATGTGCTCACCTCAACATTACTCTCTTCTCTCTCTTGTGGCTTTGGATCCAACCGAACCGAAGCCCTCTTTGCTTCAATCTTCATCAAGCAAATGGTGGAGCACGAGGCTGCAATGAGCTCTTAGCGCAACACATTTGCAGTTTCGTGCTCTCAGAGGATCAAGATGGAGACGTCGACGAAGAAGAAGGAGAACATATTGATGAAGAAATATGAAGTAGGGAGGATGTTAGGTCAAGGCGCTTTTGCCAAAGTTT...

CDS

1 records

下载 CDS FASTA
LOC131002047
ATGGAGACGTCGACGAAGAAGAAGGAGAACATATTGATGAAGAAATATGAAGTAGGGAGGATGTTAGGTCAAGGCGCTTTTGCCAAAGTTTACTACGGTAGGAATGTGAGAACAGGGCAGAGTGTGGCAATCAAGGTTATCGACAAGCAAAAAGTGGTGAAAGTTGGGCTCATCAATCAGATCAAACGAGAGATCTCCATCATGAACCTGGTCAGGCACCCCAACATCATGCATCTTGAGGAAGTCATGGCCACCAAGAC...

Protein

1 records

下载 Protein FASTA
XP_057784702.1
METSTKKKENILMKKYEVGRMLGQGAFAKVYYGRNVRTGQSVAIKVIDKQKVVKVGLINQIKREISIMNLVRHPNIMHLEEVMATKTKIYFIMEYAKGGELFKKIVKGRLKEEAARAYFQQLIRAVDFCHSRGVYHRDLKPENLLLDENGNLKVSDFGLSALSESKRQDGLLHTTCGTPAYVSPEVISKRGYDGAKSDIWSCGVILFVMLAGHLPFHCRNLMDMYRNIAKASYKCPHWFSPEVRRLLSRIIDPNPNTRIS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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