当前解析结果
SmilChr08G002514| 统一新 Gene ID | SmilChr08G002514 |
|---|---|
| 名称 | SmilChr08G002514 |
| 描述 | CBL-interacting protein kinase 2-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 24339221 - 24341687 / - |
| NCBI Gene ID | LOC131002047 |
|---|---|
| GeneID | 131002047 |
| locus_tag | - |
| NCBI Name | LOC131002047 |
| 原始查询 | SmilChr08G002514 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | CBL-interacting protein kinase 2-like |
| 产物 | CBL-interacting protein kinase 2-like |
| Arabidopsis | AT5G58380 (SIP1)SOS3-interacting protein 1 [Source:NCBI gene (formerly Entrezgene);Acc:835951] identity=58.1; qcov=1.03; evalue=0; confidence=high |
| Rice | Os07g0678600 (OsCIPK02)- identity=62.5; qcov=0.982; evalue=0; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0007165 (signal transduction) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF03822 (NAF); PF07714 (PK_Tyr_Ser-Thr); PF14531 (Kinase-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131002047 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057784702.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057784702.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057784702.1 |
| 4 | Cell membrane | 细胞膜 | 0.20000 | XP_057784702.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057784702.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:24339637 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr8:24339662 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B2 |
Chr8:24339692 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C35 |
Chr8:24340238 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B23,B77 |
Chr8:24340283 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B125,C21,C36 |
Chr8:24340378 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A21,B137,B86,C18,C54 |
Chr8:24340418 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B52,C6 |
Chr8:24340457 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B31,C3 |
Chr8:24340475 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A16,B115,B99,C62,C84 |
Chr8:24340502 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B122,B38,B39 |
Chr8:24340523 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057784702.1PF00069
Pkinase 16-270 aa
PF07714
PK_Tyr_Ser-Thr 18-266 aa
PF14531
Kinase-like 107-258 aa
PF03822
NAF 307-359 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057784702.1 |
Pfam | PF00069 |
Pkinase | Domain | 16 | 270 | 7.8e-77 | 258.9 | Protein kinase domain |
XP_057784702.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 18 | 266 | 2.1e-39 | 136.1 | Protein tyrosine and serine/threonine kinase |
XP_057784702.1 |
Pfam | PF14531 |
Kinase-like | Family | 107 | 258 | 1.2e-08 | 35.2 | Kinase-like |
XP_057784702.1 |
Pfam | PF03822 |
NAF | Domain | 307 | 359 | 2.3e-19 | 70.0 | NAF domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。