当前解析结果
SmilChr08G002540| 统一新 Gene ID | SmilChr08G002540 |
|---|---|
| 名称 | SmilChr08G002540 |
| 描述 | uncharacterized SmilChr08G002540 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 24677723 - 24684944 / - |
| NCBI Gene ID | LOC130997181 |
|---|---|
| GeneID | 130997181 |
| locus_tag | - |
| NCBI Name | LOC130997181 |
| 原始查询 | SmilChr08G002540 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | appr-1-p processing enzyme family protein [Source:NCBI gene (formerly Entrezgene);Acc:818655]; symbol=AT2G40600; hit=AT2G40600; species=arabidopsis; confidence=high |
| 产物 | appr-1-p processing enzyme family protein [Source:NCBI gene (formerly Entrezgene);Acc:818655]; symbol=AT2G40600; hit=AT2G40600; species=arabidopsis; confidence=high |
| Arabidopsis | AT2G40600 (AT2G40600)appr-1-p processing enzyme family protein [Source:NCBI gene (formerly Entrezgene);Acc:818655] identity=71.7; qcov=0.663; evalue=6.62e-102; confidence=high |
| Rice | Os03g0336500- identity=66.3; qcov=0.649; evalue=2.09e-88; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF01661 (Macro) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997181 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057778420.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 0.40000 | XP_057778420.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057778420.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057778420.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057778420.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:24678038 |
C |
CA |
1bp_insertion | frameshift_variant | 1 | B108 |
Chr8:24678038 |
C |
CA |
1bp_insertion | CDS_variant | 1 | B108 |
Chr8:24678039 |
T |
TAA |
2bp_insertion | frameshift_variant | 1 | B108 |
Chr8:24678039 |
T |
TAA |
2bp_insertion | CDS_variant | 1 | B108 |
Chr8:24678069 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C32,C68 |
Chr8:24683321 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C37 |
Chr8:24684742 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C68 |
Chr8:24684915 |
AT |
* |
1bp_deletion | CDS_variant | 2 | B66,B8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057778420.1PF01661
Macro 134-251 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057778420.1 |
Pfam | PF01661 |
Macro | Domain | 134 | 251 | 1.2e-41 | 142.0 | Macro domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。