Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002560`

染色体: Chr08 坐标: 24907184-24911211 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002560`
名称	SmilChr08G002560
描述	uncharacterized SmilChr08G002560
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	24907184 - 24911211 / `+`

ID 对照

NCBI Gene ID	`LOC130997199`
GeneID	`130997199`
locus_tag	`-`
NCBI Name	`LOC130997199`
原始查询	`SmilChr08G002560`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	cation-transporting ATPase [Source:NCBI gene (formerly Entrezgene);Acc:830406]; symbol=AT5G05240; hit=AT5G05240; species=arabidopsis; confidence=medium
产物	cation-transporting ATPase [Source:NCBI gene (formerly Entrezgene);Acc:830406]; symbol=AT5G05240; hit=AT5G05240; species=arabidopsis; confidence=medium
Arabidopsis	`AT5G05240` (AT5G05240) cation-transporting ATPase [Source:NCBI gene (formerly Entrezgene);Acc:830406] identity=42.6; qcov=0.866; evalue=5e-92; confidence=medium
Rice	`Os02g0132200` - identity=39.4; qcov=0.868; evalue=5.27e-88; confidence=medium
GO	-
KEGG	-
Pfam	PF27747 (UCP030365)
InterPro	-
eggNOG	-
NR	GeneID:130997199

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057778435.1`
2	Chromosome	染色体	0.00000	`XP_057778435.1`
3	Centromere	着丝粒	0.00000	`XP_057778435.1`
4	Chromatin	染色质	0.00000	`XP_057778435.1`
5	Telomere	端粒	0.00000	`XP_057778435.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:24908303`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:24908553`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C51,C57
`Chr8:24908818`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B20,C56
`Chr8:24909186`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B91,D6
`Chr8:24909873`	`GC`	`G`	1bp_deletion	frameshift_variant	1	C7
`Chr8:24909873`	`GC`	`G`	1bp_deletion	CDS_variant	1	C7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057778435.1

549 aa

274

549

UCP030365

PF27747 UCP030365 13-273 aa PF27747 UCP030365 341-547 aa

XP_057778436.1

529 aa

264

529

UCP030365

PF27747 UCP030365 70-253 aa PF27747 UCP030365 321-527 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057778435.1`	Pfam	`PF27747`	UCP030365	Family	13	273	6.6e-128	428.8	Uncharacterised conserved protein UCP030365
`XP_057778435.1`	Pfam	`PF27747`	UCP030365	Family	341	547	6.6e-128	428.8	Uncharacterised conserved protein UCP030365
`XP_057778436.1`	Pfam	`PF27747`	UCP030365	Family	70	253	2.7e-128	430.1	Uncharacterised conserved protein UCP030365
`XP_057778436.1`	Pfam	`PF27747`	UCP030365	Family	321	527	2.7e-128	430.1	Uncharacterised conserved protein UCP030365

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057922452.1
TGAATCTGAATACACCAAAAAGGCAAAAACAATAAAAATTAAAAATGTCGCAATTAAACAAATAAATCGAAGCGCTTTTTTTTCTCAGCGCGCTCCCTCTGATATTCAAATCCAAATATCTTGAGTGGGAGAGGGATAGTCCTAACTCCTAAACCGGTTGACTAATTTTCAAATTTCGCCATTGACATACCTTAATCAAGAAACCTTCAATCTACCTGCCTTCTCTTTCTCCTCTTCCCTCTTTTAATTTTGACGTGGCA...

XM_057922453.1
CCAAAAAGGCAAAAACAATAAAAATTAAAAATGTCGCAATTAAACAAATAAATCGAAGCGCTTTTTTTTCTCAGCGCGCTCCCTCTGATATTCAAATCCAAATATCTTGAGTGGGAGAGGGATAGTCCTAACTCCTAAACCGGTTGACTAATTTTCAAATTTCGCCATTGACATACCTTAATCAAGAAACCTTCAATCTACCTGCCTTCTCTTTCTCCTCTTCCCTCTTTTAATTTTGACGTGGCAGACTGATTAAAGCT...

CDS

2 records

下载 CDS FASTA

LOC130997199
ATGGGTGGTGTGAATCAGTCTCCAACAGAGCACAGATCTGAATCAAAGAAAAGGTGTAGTATGGAAATCAAAGAAACCTCCGAAACTTCTCAAAAGAGAGTGAAAATGCGCGATCTTGAATCAGTTTTTCGCTCCGAAGGAAGAGGAGGAAACGATGCAGCAACTCCGGATTCAAGAGTGATTGATCTGAATGTTCATGTTGGTTCTGCGAGCTGCGTGGTTGGTGTTGATGATCCTGCATGTGTAGATGAATCAAACAA...

LOC130997199
ATGGAAATCAAAGAAACCTCCGAAACTTCTCAAAAGAGAGTGAAAATGCGCGATCTTGAATCAGTTTTTCGCTCCGAAGGAAGAGGAGGAAACGATGCAGCAACTCCGGATTCAAGAGTGATTGATCTGAATGTTCATGTTGGTTCTGCGAGCTGCGTGGTTGGTGTTGATGATCCTGCATGTGTAGATGAATCAAACAATCTCCCTGCTTCTGAGAAGGAAGACATGCAAAATATAGATGGCATAATGAAAGCTAGAGG...

Protein

2 records

下载 Protein FASTA

XP_057778435.1
MGGVNQSPTEHRSESKKRCSMEIKETSETSQKRVKMRDLESVFRSEGRGGNDAATPDSRVIDLNVHVGSASCVVGVDDPACVDESNNLPASEKEDMQNIDGIMKARGFDLDLNAADVSSSINESMYPCKMHEHLRSKDDSDCVSSVGPLDTKDPMRVWKGLKQNNYLSTPYGAPPVAMPKVRGRKKSSSNDVMKKKIELAKKEQVDRFARVAAPSGLLNGLNPGIINHVRNSKQVHSIIEALVRSKKDESLHSGNRKRNQ...

XP_057778436.1
MEIKETSETSQKRVKMRDLESVFRSEGRGGNDAATPDSRVIDLNVHVGSASCVVGVDDPACVDESNNLPASEKEDMQNIDGIMKARGFDLDLNAADVSSSINESMYPCKMHEHLRSKDDSDCVSSVGPLDTKDPMRVWKGLKQNNYLSTPYGAPPVAMPKVRGRKKSSSNDVMKKKIELAKKEQVDRFARVAAPSGLLNGLNPGIINHVRNSKQVHSIIEALVRSKKDESLHSGNRKRNQIKTGAHDLSERREAMNVRGL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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