Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002567`

染色体: Chr08 坐标: 25039889-25043948 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002567`
名称	SmilChr08G002567
描述	mediator of RNA polymerase II transcription subunit 20a-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	25039889 - 25043948 / `+`

ID 对照

NCBI Gene ID	`LOC130997206`
GeneID	`130997206`
locus_tag	`-`
NCBI Name	`LOC130997206`
原始查询	`SmilChr08G002567`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	mediator of RNA polymerase II transcription subunit 20a-like
产物	mediator of RNA polymerase II transcription subunit 20a-like
Arabidopsis	`AT2G28230` (AT2G28230) TATA-binding related factor (TRF) of subunit 20 of Mediator complex [Source:NCBI gene (formerly Entrezgene);Acc:817369] identity=64.4; qcov=0.986; evalue=2.07e-109; confidence=high
Rice	`Os09g0443500` (OsMED20_1) - identity=56.2; qcov=1.02; evalue=3.68e-96; confidence=high
GO	GO:0003713 (transcription coactivator activity); GO:0006357 (regulation of transcription by RNA polymerase II); GO:0016592 (mediator complex)
KEGG	-
Pfam	PF08612 (Med20)
InterPro	-
eggNOG	-
NR	GeneID:130997206

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057778439.1`
2	Nucleoplasm	核质	1.00000	`XP_057778440.1`
3	Cytoplasm	细胞质	0.40000	`XP_057778439.1`
4	Cytosol	细胞质基质	0.40000	`XP_057778439.1`
5	Chromosome	染色体	0.00000	`XP_057778440.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:25040077`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B6,C25
`Chr8:25040132`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A2,B107,C46
`Chr8:25040219`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B76
`Chr8:25040231`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B60,B96,C15,C85
`Chr8:25040252`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A6,B43,B6
`Chr8:25040259`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A1,B47
`Chr8:25040307`	`GT`	`G`	1bp_deletion	frameshift_variant	5	B104,C39,C8,C82,C83
`Chr8:25040307`	`GT`	`G`	1bp_deletion	CDS_variant	5	B104,C39,C8,C82,C83
`Chr8:25040330`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A1,B47,B68,C63,D1
`Chr8:25040338`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A1,B47,B68,C63,D1
`Chr8:25041248`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B125,B47,B69,C16,C56
`Chr8:25041300`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B137,B40,B78

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057778439.1

356 aa

178

356

Med20

PF08612 Med20 135-340 aa

XP_057778440.1

222 aa

111

222

Med20

PF08612 Med20 1-206 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057778439.1`	Pfam	`PF08612`	Med20	Family	135	340	7.2e-52	176.6	TATA-binding related factor (TRF) of subunit 20 of Mediator complex
`XP_057778440.1`	Pfam	`PF08612`	Med20	Family	1	206	1.9e-52	178.4	TATA-binding related factor (TRF) of subunit 20 of Mediator complex

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057922456.1
CAATATTTAGCATAATATAAATACAGAGAGGCATTCATTTTTAGGGTTTCAGCCGCTGCCTTTGAATTCTAGAGTGTTCTCCACTTCTTCCAAAATTCTACCCTAATCTCATTACAGATCCGCCGTTCTCACTTTCCAGATTCAACGCTCCAAACATTCTCCACAAGCCACGGCTGCCGATGCTCTCCCTCTTCATCTCTCTGACTCTCTCCCTCTGCCTCACCCTCTATTTCTTAATCCCATCTCCCTCGACCTATCTG...

XM_057922457.1
CCACGCGGCGTCGCCTCCTTCCTCGCCGACAACGAATGCTCCGCCGCATCCTTCTGCATAGCCCGTATCCAGCCGCCGCCGTCCGGGTTTCAAACGACGGCTCCAGATCTCGGCTTCTTCCCTAGATTTTCAAATTTATTCACCCTTCAACGAGCTTCGATTCGTTGACACTATGCCCATCAAATGGATTTTGCACTGGCAGCCCAACCCGGGCACGACCGTGAACACCCAAATCCTCTCAGAAGTGTCTCAGTGCGCTG...

CDS

2 records

下载 CDS FASTA

LOC130997206
ATGCTCTCCCTCTTCATCTCTCTGACTCTCTCCCTCTGCCTCACCCTCTATTTCTTAATCCCATCTCCCTCGACCTATCTGATTTCGCGACACAACGGCGGTAAAGCCCTACATCCCCAATCCACCCACTCCGCTCTCACATCTAGGCACTGCGTCGCTCCACGCGGCGTCGCCTCCTTCCTCGCCGACAACGAATGCTCCGCCGCATCCTTCTGCATAGCCCGTATCCAGCCGCCGCCGTCCGGGTTTCAAACGACGGC...

LOC130997206
ATGCCCATCAAATGGATTTTGCACTGGCAGCCCAACCCGGGCACGACCGTGAACACCCAAATCCTCTCAGAAGTGTCTCAGTGCGCTGAGAGCATCAATGGCGTTAAAGAAGGGCGCTGGAAAACCACTCTCAGTTTCTACAAAGCCATGGTTAGAGAACAAGCTATTGCGAATGACTTTCCTCGTGATTTTGTGGGGATTTCGCTTGCGGAGCAGCCCGGCAAATATTTCTTAGTAATTAGAGGGCAGCGTCTTGTAGT...

Protein

2 records

下载 Protein FASTA

XP_057778439.1
MLSLFISLTLSLCLTLYFLIPSPSTYLISRHNGGKALHPQSTHSALTSRHCVAPRGVASFLADNECSAASFCIARIQPPPSGFQTTAPDLGFFPNPRDNHFHALLIDTENSEKYQPLHDFQIYSPFNELRFVDTMPIKWILHWQPNPGTTVNTQILSEVSQCAESINGVKEGRWKTTLSFYKAMVREQAIANDFPRDFVGISLAEQPGKYFLVIRGQRLVVEAESSIQMIMEKLQSYKTRVALNFEGNQYQLGDFQLRVG...

XP_057778440.1
MPIKWILHWQPNPGTTVNTQILSEVSQCAESINGVKEGRWKTTLSFYKAMVREQAIANDFPRDFVGISLAEQPGKYFLVIRGQRLVVEAESSIQMIMEKLQSYKTRVALNFEGNQYQLGDFQLRVGKVVPMNSENLRGIVMEMEYVPISSWEKSREILGDFFELWQEALSKRSLPGHFVHNEPNFAEYGLPDQYGMQHTAIQYANITAQIVATSQSVQAPRN

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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