Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002588`

染色体: Chr08 坐标: 25199742-25218578 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002588`
名称	SmilChr08G002588
描述	uncharacterized SmilChr08G002588
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	25199742 - 25218578 / `-`

ID 对照

NCBI Gene ID	`LOC130997226`
GeneID	`130997226`
locus_tag	`-`
NCBI Name	`LOC130997226`
原始查询	`SmilChr08G002588`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:818674]; symbol=AT2G40770; hit=AT2G40770; species=arabidopsis; confidence=high
产物	RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:818674]; symbol=AT2G40770; hit=AT2G40770; species=arabidopsis; confidence=high
Arabidopsis	`AT2G40770` (AT2G40770) RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:818674] identity=55.1; qcov=1.02; evalue=0; confidence=high
Rice	`Os07g0680500` - identity=61.5; qcov=0.137; evalue=2.83e-80; confidence=weak
GO	GO:0005524 (ATP binding); GO:0140658 (ATP-dependent chromatin remodeler activity)
KEGG	-
Pfam	PF00176 (SNF2-rel_dom); PF00271 (Helicase_C); PF00628 (PHD); PF21324 (SHPRH_helical-2nd); PF21325 (SHPRH_helical-1st)
InterPro	-
eggNOG	-
NR	GeneID:130997226

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057778467.1`
2	Chromosome	染色体	0.00000	`XP_057778467.1`
3	Centromere	着丝粒	0.00000	`XP_057778467.1`
4	Chromatin	染色质	0.00000	`XP_057778467.1`
5	Telomere	端粒	0.00000	`XP_057778467.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:25200202`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr8:25200849`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C16
`Chr8:25200956`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B38,B39,C39
`Chr8:25202340`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:25206735`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B135,B35,C61,C62
`Chr8:25207928`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B58,B90,B92,C43
`Chr8:25208243`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B27
`Chr8:25209707`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B121,B79
`Chr8:25209713`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B121,B79
`Chr8:25210037`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:25210079`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B121,B79
`Chr8:25211600`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C82

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057778467.1

1654 aa

827

1654

SNF2-rel_dom

PHD

SHPRH_helical-1st

SHPRH_helical-2nd

Helicase_C

PF00176 SNF2-rel_dom 288-794 aa PF00628 PHD 412-452 aa PF21325 SHPRH_helical-1st 810-889 aa PF21324 SHPRH_helical-2nd 999-1244 aa PF00271 Helicase_C 1438-1561 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057778467.1`	Pfam	`PF00176`	SNF2-rel_dom	Domain	288	794	3.8e-65	220.6	SNF2-related domain
`XP_057778467.1`	Pfam	`PF00628`	PHD	Domain	412	452	3e-05	24.7	PHD-finger
`XP_057778467.1`	Pfam	`PF21325`	SHPRH_helical-1st	Repeat	810	889	3.7e-23	82.3	E3 ubiquitin-protein ligase SHPRH, first helical domain
`XP_057778467.1`	Pfam	`PF21324`	SHPRH_helical-2nd	Domain	999	1244	1.6e-43	149.5	E3 ubiquitin-protein ligase SHPRH, second helical domain
`XP_057778467.1`	Pfam	`PF00271`	Helicase_C	Domain	1438	1561	6e-08	33.6	Helicase conserved C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057922484.1
CTTGTTCCACGCATCGCATTATTAAAGCTGCTGTTTTTATGTTGTTGAGTTAGTGATAGAGTGTTTTTTCTTTTTGGCTGTGTAGTCATGGGTAGGAGGAAGCAAATTCGGCCACGTAGAACTGGGAGAACGGTAGAAGGGCTGACATCTGAATCAGAATTCAACAAAGATGGCGTTGCACATCACGGAAAAGATGGATTGGTCGCAGTTGAAGAACCGTTTTTTGTCGAAATTGATAAGTCTAGTTGGGTTTGTGAGGA...

CDS

1 records

下载 CDS FASTA

LOC130997226
ATGGGTAGGAGGAAGCAAATTCGGCCACGTAGAACTGGGAGAACGGTAGAAGGGCTGACATCTGAATCAGAATTCAACAAAGATGGCGTTGCACATCACGGAAAAGATGGATTGGTCGCAGTTGAAGAACCGTTTTTTGTCGAAATTGATAAGTCTAGTTGGGTTTGTGAGGAGCATTATGATATCTCTGAAATTGTTCTGAGGAATTTGACGGTGAGTGAGGAGTTTTGCGGCTACAACTTGTCTGAGGAGTTTTACAG...

Protein

1 records

下载 Protein FASTA

XP_057778467.1
MGRRKQIRPRRTGRTVEGLTSESEFNKDGVAHHGKDGLVAVEEPFFVEIDKSSWVCEEHYDISEIVLRNLTVSEEFCGYNLSEEFYSDSSCFLRFKLSNVNEHLVRMKLGNWPVLPESDICLQFVMKCSVEEAERDVVMVSGTVDGSDEGVTGLVHLASLRYLTVRPISGIKFLKGMSSVSIRVEILGSVFDECESLLDNTRQLWKKSMMNVMAWLRPEVMTSEARYGYNGFTNVEVDELLVADDDPYASRQQMKFEVSS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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