当前解析结果
SmilChr08G002595| 统一新 Gene ID | SmilChr08G002595 |
|---|---|
| 名称 | SmilChr08G002595 |
| 描述 | uncharacterized SmilChr08G002595 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 25285261 - 25289683 / + |
| NCBI Gene ID | LOC130997233 |
|---|---|
| GeneID | 130997233 |
| locus_tag | - |
| NCBI Name | LOC130997233 |
| 原始查询 | SmilChr08G002595 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831906]; symbol=AT5G01960; hit=AT5G01960; species=arabidopsis; confidence=high |
| 产物 | RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831906]; symbol=AT5G01960; hit=AT5G01960; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G01960 (AT5G01960)RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831906] identity=64.2; qcov=0.953; evalue=0; confidence=high |
| Rice | Os01g0168400- identity=60.3; qcov=0.973; evalue=0; confidence=high |
| GO | GO:0061630 (ubiquitin protein ligase activity); GO:1904294 (positive regulation of ERAD pathway) |
| KEGG | - |
| Pfam | PF00097 (zf-C3HC4); PF13445 (zf-RING_UBOX); PF13639 (zf-RING_2); PF13920 (zf-C3HC4_3); PF13923 (zf-C3HC4_2); PF14634 (zf-RING_5) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997233 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057778476.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057778476.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057778476.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057778476.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057778476.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:25285839 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B56,B96,C53 |
Chr8:25285993 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr8:25287863 |
G |
GTA |
2bp_insertion | frameshift_variant | 17 | B118,B27,B40,B41,B42,B46,B63,B69,B71,C16,C17,C6,C62,C70,C84,C87,D4 |
Chr8:25287876 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B123,B40 |
Chr8:25287881 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B50,B80,C22 |
Chr8:25287887 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C35 |
Chr8:25288808 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B16,C31,C87 |
Chr8:25289320 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B36,B94,C5 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057778476.1PF13920
zf-C3HC4_3 382-425 aa
PF13639
zf-RING_2 383-422 aa
PF13445
zf-RING_UBOX 384-419 aa
PF00097
zf-C3HC4 384-421 aa
PF13923
zf-C3HC4_2 384-421 aa
PF14634
zf-RING_5 384-422 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057778476.1 |
Pfam | PF13920 |
zf-C3HC4_3 | Domain | 382 | 425 | 5.1e-10 | 39.7 | Zinc finger, C3HC4 type (RING finger) |
XP_057778476.1 |
Pfam | PF13639 |
zf-RING_2 | Domain | 383 | 422 | 1.4e-10 | 41.9 | Ring finger domain |
XP_057778476.1 |
Pfam | PF13445 |
zf-RING_UBOX | Domain | 384 | 419 | 4.8e-08 | 33.6 | RING-type zinc-finger |
XP_057778476.1 |
Pfam | PF00097 |
zf-C3HC4 | Domain | 384 | 421 | 2.3e-09 | 37.7 | Zinc finger, C3HC4 type (RING finger) |
XP_057778476.1 |
Pfam | PF13923 |
zf-C3HC4_2 | Domain | 384 | 421 | 4.5e-08 | 33.5 | Zinc finger, C3HC4 type (RING finger) |
XP_057778476.1 |
Pfam | PF14634 |
zf-RING_5 | Domain | 384 | 422 | 2e-07 | 31.6 | zinc-RING finger domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。