当前解析结果
SmilChr08G002620| 统一新 Gene ID | SmilChr08G002620 |
|---|---|
| 名称 | SmilChr08G002620 |
| 描述 | uncharacterized SmilChr08G002620 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 25551279 - 25554892 / + |
| NCBI Gene ID | LOC130997259 |
|---|---|
| GeneID | 130997259 |
| locus_tag | - |
| NCBI Name | LOC130997259 |
| 原始查询 | SmilChr08G002620 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | microfibrillar-associated protein-like protein [Source:NCBI gene (formerly Entrezgene);Acc:831658]; symbol=AT5G17900; hit=AT5G17900; species=arabidopsis; confidence=high |
| 产物 | microfibrillar-associated protein-like protein [Source:NCBI gene (formerly Entrezgene);Acc:831658]; symbol=AT5G17900; hit=AT5G17900; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G17900 (AT5G17900)microfibrillar-associated protein-like protein [Source:NCBI gene (formerly Entrezgene);Acc:831658] identity=71.1; qcov=1.01; evalue=1.72e-179; confidence=high |
| Rice | Os02g0280100- identity=77.1; qcov=0.605; evalue=4.08e-125; confidence=high |
| GO | GO:0000398 (mRNA splicing, via spliceosome); GO:0003723 (RNA binding); GO:0005684 (U2-type spliceosomal complex) |
| KEGG | - |
| Pfam | PF06991 (MFAP1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997259 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057778504.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057778504.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057778504.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057778504.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057778504.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:25551588 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C11,C69 |
Chr8:25551711 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B57 |
Chr8:25552038 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C52 |
Chr8:25552050 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B78 |
Chr8:25552216 |
AT |
A |
1bp_deletion | frameshift_variant | 1 | C84 |
Chr8:25552216 |
AT |
A |
1bp_deletion | CDS_variant | 1 | C84 |
Chr8:25552219 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C84 |
Chr8:25552404 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:25552623 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A2,A5,B7,B80,C73 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057778504.1PF06991
MFAP1 169-390 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057778504.1 |
Pfam | PF06991 |
MFAP1 | Family | 169 | 390 | 7.8e-76 | 255.4 | Microfibril-associated/Pre-mRNA processing |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。