当前解析结果
SmilChr08G002624| 统一新 Gene ID | SmilChr08G002624 |
|---|---|
| 名称 | SmilChr08G002624 |
| 描述 | receptor-like protein EIX2 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 25614220 - 25617207 / + |
| NCBI Gene ID | LOC130998240 |
|---|---|
| GeneID | 130998240 |
| locus_tag | - |
| NCBI Name | LOC130998240 |
| 原始查询 | SmilChr08G002624 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | receptor-like protein EIX2 |
| 产物 | receptor-like protein EIX2 |
| Arabidopsis | AT2G34930 (AT2G34930)disease resistance family protein / LRR family protein [Source:NCBI gene (formerly Entrezgene);Acc:818058] identity=37; qcov=0.943; evalue=2.13e-158; confidence=medium |
| Rice | Os01g0601675- identity=36.4; qcov=1.03; evalue=5.17e-170; confidence=medium |
| GO | GO:0005515 (protein binding) |
| KEGG | smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00560 (LRR_1); PF08263 (LRRNT_2); PF13516 (LRR_6); PF13855 (LRR_8); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998240 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057779655.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057779655.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057779655.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057779655.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057779655.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:25614257 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr8:25614296 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B120,C41 |
Chr8:25614313 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B16 |
Chr8:25614322 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A20,B106,B61 |
Chr8:25614323 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A20,B106,B16,B61 |
Chr8:25614332 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr8:25614360 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr8:25614361 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B72 |
Chr8:25614367 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr8:25614380 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B114,B137,C19,C38 |
Chr8:25614392 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr8:25614428 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B140,C86 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057779655.1PF08263
LRRNT_2 30-67 aa
PF23598
LRR_14 108-277 aa
PF00560
LRR_1 142-164 aa
PF13855
LRR_8 222-281 aa
PF13516
LRR_6 245-259 aa
PF00560
LRR_1 247-269 aa
PF00560
LRR_1 271-293 aa
PF13516
LRR_6 293-307 aa
PF00560
LRR_1 295-317 aa
PF00560
LRR_1 344-366 aa
PF00560
LRR_1 393-415 aa
PF00560
LRR_1 417-439 aa
PF00560
LRR_1 540-558 aa
PF13516
LRR_6 583-598 aa
PF00560
LRR_1 614-636 aa
PF00560
LRR_1 736-756 aa
PF13855
LRR_8 804-859 aa
PF00560
LRR_1 805-824 aa
PF00560
LRR_1 827-848 aa
PF00560
LRR_1 851-872 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057779655.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 30 | 67 | 3.7e-11 | 43.8 | Leucine rich repeat N-terminal domain |
XP_057779655.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 108 | 277 | 1.8e-41 | 142.8 | Leucine-rich repeat region |
XP_057779655.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 142 | 164 | 1.3e-63 | 197.8 | Leucine Rich Repeat |
XP_057779655.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 222 | 281 | 4.3e-58 | 193.7 | Leucine rich repeat |
XP_057779655.1 |
Pfam | PF13516 |
LRR_6 | Repeat | 245 | 259 | 1.4e-18 | 66.1 | Leucine Rich repeat |
XP_057779655.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 247 | 269 | 1.3e-63 | 197.8 | Leucine Rich Repeat |
XP_057779655.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 271 | 293 | 1.3e-63 | 197.8 | Leucine Rich Repeat |
XP_057779655.1 |
Pfam | PF13516 |
LRR_6 | Repeat | 293 | 307 | 1.4e-18 | 66.1 | Leucine Rich repeat |
XP_057779655.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 295 | 317 | 1.3e-63 | 197.8 | Leucine Rich Repeat |
XP_057779655.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 344 | 366 | 1.3e-63 | 197.8 | Leucine Rich Repeat |
XP_057779655.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 393 | 415 | 1.3e-63 | 197.8 | Leucine Rich Repeat |
XP_057779655.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 417 | 439 | 1.3e-63 | 197.8 | Leucine Rich Repeat |
XP_057779655.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 540 | 558 | 1.3e-63 | 197.8 | Leucine Rich Repeat |
XP_057779655.1 |
Pfam | PF13516 |
LRR_6 | Repeat | 583 | 598 | 1.4e-18 | 66.1 | Leucine Rich repeat |
XP_057779655.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 614 | 636 | 1.3e-63 | 197.8 | Leucine Rich Repeat |
XP_057779655.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 736 | 756 | 1.3e-63 | 197.8 | Leucine Rich Repeat |
XP_057779655.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 804 | 859 | 4.3e-58 | 193.7 | Leucine rich repeat |
XP_057779655.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 805 | 824 | 1.3e-63 | 197.8 | Leucine Rich Repeat |
XP_057779655.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 827 | 848 | 1.3e-63 | 197.8 | Leucine Rich Repeat |
XP_057779655.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 851 | 872 | 1.3e-63 | 197.8 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。