当前解析结果
SmilChr08G002659| 统一新 Gene ID | SmilChr08G002659 |
|---|---|
| 名称 | SmilChr08G002659 |
| 描述 | hexose carrier protein HEX6 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 26068488 - 26071827 / + |
| NCBI Gene ID | LOC130997295 |
|---|---|
| GeneID | 130997295 |
| locus_tag | - |
| NCBI Name | LOC130997295 |
| 原始查询 | SmilChr08G002659 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hexose carrier protein HEX6 |
| 产物 | hexose carrier protein HEX6 |
| Arabidopsis | AT5G61520 (AT5G61520)Major facilitator superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:836273] identity=61.9; qcov=0.978; evalue=0; confidence=high |
| Rice | Os09g0268300 (B1008E06.22-2)- identity=62.8; qcov=0.974; evalue=0; confidence=high |
| GO | GO:0015145 (monosaccharide transmembrane transporter activity); GO:0015749 (monosaccharide transmembrane transport); GO:0016020 (membrane) |
| KEGG | - |
| Pfam | PF00083 (Sugar_tr); PF07690 (MFS_1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997295 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057778547.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057778547.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057778547.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057778547.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057778547.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:26068689 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B94 |
Chr8:26068963 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B106,B61 |
Chr8:26069067 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | C13,C39,C83,D6 |
Chr8:26070480 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C47 |
Chr8:26070540 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A18,B33,B98,C32,C68 |
Chr8:26070582 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B103,B42,B6,B62,C25 |
Chr8:26070619 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B115,B78,C80 |
Chr8:26070684 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B131,D11 |
Chr8:26070698 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr8:26070722 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A18,B33,B98,C32,C68 |
Chr8:26070788 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B15,B41,C15 |
Chr8:26070840 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B88 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057778547.1PF00083
Sugar_tr 27-487 aa
PF07690
MFS_1 76-437 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057778547.1 |
Pfam | PF00083 |
Sugar_tr | Family | 27 | 487 | 1.1e-118 | 397.8 | Sugar (and other) transporter |
XP_057778547.1 |
Pfam | PF07690 |
MFS_1 | Family | 76 | 437 | 1.6e-23 | 84.0 | Major Facilitator Superfamily |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。