当前解析结果
SmilChr08G002661| 统一新 Gene ID | SmilChr08G002661 |
|---|---|
| 名称 | SmilChr08G002661 |
| 描述 | hexose carrier protein HEX6-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 26084130 - 26086335 / - |
| NCBI Gene ID | LOC130997297 |
|---|---|
| GeneID | 130997297 |
| locus_tag | - |
| NCBI Name | LOC130997297 |
| 原始查询 | SmilChr08G002661 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hexose carrier protein HEX6-like |
| 产物 | hexose carrier protein HEX6-like |
| Arabidopsis | AT4G02050 (STP7)sugar transporter protein 7 [Source:NCBI gene (formerly Entrezgene);Acc:828154] identity=55; qcov=0.949; evalue=0; confidence=high |
| Rice | Os09g0268300 (B1008E06.22-2)- identity=58.8; qcov=0.949; evalue=0; confidence=high |
| GO | GO:0015145 (monosaccharide transmembrane transporter activity); GO:0015749 (monosaccharide transmembrane transport); GO:0016020 (membrane) |
| KEGG | - |
| Pfam | PF00083 (Sugar_tr); PF07690 (MFS_1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997297 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057778549.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057778549.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057778549.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057778549.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057778549.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:26084465 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B107 |
Chr8:26084591 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | C49 |
Chr8:26084591 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C49 |
Chr8:26084600 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B106,B61 |
Chr8:26084618 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A15,B56,B96 |
Chr8:26084689 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B99,C87 |
Chr8:26084841 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A19,B100,B49,B85 |
Chr8:26084882 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B88,C14,D10 |
Chr8:26084918 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:26085372 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B132 |
Chr8:26085401 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | C13,C39,C83,D6 |
Chr8:26085488 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057778549.1PF00083
Sugar_tr 26-486 aa
PF07690
MFS_1 57-435 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057778549.1 |
Pfam | PF00083 |
Sugar_tr | Family | 26 | 486 | 2.5e-118 | 396.6 | Sugar (and other) transporter |
XP_057778549.1 |
Pfam | PF07690 |
MFS_1 | Family | 57 | 435 | 2.9e-25 | 89.6 | Major Facilitator Superfamily |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。