当前解析结果
SmilChr08G002666| 统一新 Gene ID | SmilChr08G002666 |
|---|---|
| 名称 | SmilChr08G002666 |
| 描述 | uncharacterized SmilChr08G002666 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 26140173 - 26149422 / - |
| NCBI Gene ID | LOC130997300 |
|---|---|
| GeneID | 130997300 |
| locus_tag | - |
| NCBI Name | LOC130997300 |
| 原始查询 | SmilChr08G002666 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | transducin family protein / WD-40 repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:828005]; symbol=SETH5; hit=AT4G00800; species=arabidopsis; confidence=high |
| 产物 | transducin family protein / WD-40 repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:828005]; symbol=SETH5; hit=AT4G00800; species=arabidopsis; confidence=high |
| Arabidopsis | AT4G00800 (SETH5)transducin family protein / WD-40 repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:828005] identity=50.4; qcov=0.98; evalue=0; confidence=high |
| Rice | Os02g0124700- identity=43.2; qcov=0.298; evalue=2.59e-133; confidence=weak |
| GO | GO:0005515 (protein binding); GO:0005770 (late endosome); GO:0006623 (protein targeting to vacuole); GO:0016192 (vesicle-mediated transport); GO:0030897 (HOPS complex); GO:0034058 (endosomal vesicle fusion) |
| KEGG | smil04148 (Efferocytosis - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF12816 (TPR_Vps8); PF23410 (Beta-prop_VPS8); PF23556 (TPR_Vps41) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997300 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 1.00000 | XP_057778554.1 |
| 2 | Trans-golgi network | Trans-golgi network | 1.00000 | XP_057778554.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057778554.1 |
| 4 | Endosome | 内体 | 0.20000 | XP_057778554.1 |
| 5 | Endosome membrane | 内体膜 | 0.20000 | XP_057778554.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:26140798 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B94,C16,C53 |
Chr8:26140812 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B140,C82 |
Chr8:26140890 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A14,C64,C87 |
Chr8:26141036 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C73 |
Chr8:26141888 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B125 |
Chr8:26142009 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B140,C82 |
Chr8:26142028 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B66,C8 |
Chr8:26142506 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B90,B92 |
Chr8:26142754 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B121,B79 |
Chr8:26142995 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B27 |
Chr8:26143000 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B132,B66,B8,C65 |
Chr8:26143428 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057778554.1PF23410
Beta-prop_VPS8 418-807 aa
PF12816
TPR_Vps8 935-1118 aa
PF23556
TPR_Vps41 1414-1495 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057778554.1 |
Pfam | PF23410 |
Beta-prop_VPS8 | Repeat | 418 | 807 | 6e-48 | 164.4 | Vps8 beta-propeller |
XP_057778554.1 |
Pfam | PF12816 |
TPR_Vps8 | Repeat | 935 | 1118 | 2.2e-48 | 165.2 | Vps8 central TPR |
XP_057778554.1 |
Pfam | PF23556 |
TPR_Vps41 | Repeat | 1414 | 1495 | 9.9e-11 | 42.1 | Vps41 TPR-like region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。