当前解析结果
SmilChr08G002670| 统一新 Gene ID | SmilChr08G002670 |
|---|---|
| 名称 | SmilChr08G002670 |
| 描述 | uncharacterized SmilChr08G002670 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 26207182 - 26211654 / + |
| NCBI Gene ID | LOC130998250 |
|---|---|
| GeneID | 130998250 |
| locus_tag | - |
| NCBI Name | LOC130998250 |
| 原始查询 | SmilChr08G002670 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os12g0142900; species=rice; confidence=weak |
| 产物 | hit=Os12g0142900; species=rice; confidence=weak |
| Arabidopsis | ATMG00860- identity=34.1; qcov=0.088; evalue=8.73e-17; confidence=weak |
| Rice | Os12g0142900- identity=31.7; qcov=0.277; evalue=2.62e-64; confidence=weak |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity); GO:0015074 (DNA integration) |
| KEGG | - |
| Pfam | PF00075 (RNase_H); PF00078 (RVT_1); PF00665 (rve); PF13456 (RVT_3); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF17921 (Integrase_H2C2); PF31073 (DUF8803) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998250 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057779665.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057779665.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057779665.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057779665.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057779665.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:26207235 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B29,B66,C67 |
Chr8:26207242 |
C |
T |
EMS_canonical_SNV | stop_gained | 3 | B117,C10,C61 |
Chr8:26207242 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B117,C10,C61 |
Chr8:26207275 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B114,C32 |
Chr8:26207278 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C58 |
Chr8:26207311 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B107,B2,B20,B98 |
Chr8:26207313 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B13,B137,C78 |
Chr8:26207314 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B13,B137,C78 |
Chr8:26207320 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C60,C78 |
Chr8:26207325 |
G |
A |
EMS_canonical_SNV | stop_gained | 5 | B11,B62,B69,C47,C74 |
Chr8:26207325 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B11,B62,B69,C47,C74 |
Chr8:26207445 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B93 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057779665.1PF00078
RVT_1 451-611 aa
PF17919
RT_RNaseH_2 674-771 aa
PF17917
RT_RNaseH 700-803 aa
PF00075
RNase_H 853-974 aa
PF13456
RVT_3 855-974 aa
PF17921
Integrase_H2C2 1074-1127 aa
PF00665
rve 1147-1242 aa
PF31073
DUF8803 1369-1433 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057779665.1 |
Pfam | PF00078 |
RVT_1 | Domain | 451 | 611 | 5.4e-35 | 121.8 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057779665.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 674 | 771 | 2.3e-23 | 82.9 | RNase H-like domain found in reverse transcriptase |
XP_057779665.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 700 | 803 | 2.1e-23 | 83.2 | RNase H-like domain found in reverse transcriptase |
XP_057779665.1 |
Pfam | PF00075 |
RNase_H | Domain | 853 | 974 | 9.7e-08 | 33.0 | RNase H |
XP_057779665.1 |
Pfam | PF13456 |
RVT_3 | Domain | 855 | 974 | 1.6e-20 | 74.0 | Reverse transcriptase-like |
XP_057779665.1 |
Pfam | PF17921 |
Integrase_H2C2 | Domain | 1074 | 1127 | 7.2e-09 | 36.4 | Integrase zinc binding domain |
XP_057779665.1 |
Pfam | PF00665 |
rve | Domain | 1147 | 1242 | 2.2e-12 | 47.8 | Integrase core domain |
XP_057779665.1 |
Pfam | PF31073 |
DUF8803 | Domain | 1369 | 1433 | 8e-13 | 48.7 | Domain of unknown function (DUF8803) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。