当前解析结果
SmilChr08G002677| 统一新 Gene ID | SmilChr08G002677 |
|---|---|
| 名称 | SmilChr08G002677 |
| 描述 | transcription factor MYC2 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 26291658 - 26293369 / - |
| NCBI Gene ID | LOC130997310 |
|---|---|
| GeneID | 130997310 |
| locus_tag | - |
| NCBI Name | LOC130997310 |
| 原始查询 | SmilChr08G002677 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | transcription factor MYC2 |
| 产物 | transcription factor MYC2 |
| Arabidopsis | AT4G00870 (AT4G00870)basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:827990] identity=41.5; qcov=0.993; evalue=4.71e-79; confidence=medium |
| Rice | Os10g0575000 (OsbHLH009)- identity=49.3; qcov=0.501; evalue=1.38e-53; confidence=medium |
| GO | GO:0000976 (transcription cis-regulatory region binding); GO:0003700 (DNA-binding transcription factor activity); GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription); GO:0046983 (protein dimerization activity) |
| KEGG | - |
| Pfam | PF00010 (HLH); PF14215 (bHLH-MYC_N); PF22754 (bHLH-TF_ACT-like_plant); PF23177 (bHLH_IRO3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997310 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057778571.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057778571.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057778571.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057778571.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057778571.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:26291977 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B28,C11,C69 |
Chr8:26292018 |
C |
CA |
1bp_insertion | frameshift_variant | 31 | A14,A5,A6,B106,B107,B123,B139,B14,B22,B23,B26,B44,B5,B60,B71,B73,B75,B82,B85,B95,C21,C24,C34,C48,C52,C56,C72,C75,C80,C86,C9 |
Chr8:26292131 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B1,B71,B89 |
Chr8:26292305 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B48,B53,B68 |
Chr8:26292347 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B28,C11 |
Chr8:26292368 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C22,C4,C62 |
Chr8:26292576 |
G |
GTA |
2bp_insertion | frameshift_variant | 18 | A1,A7,A9,B106,B110,B115,B122,B125,B19,B3,B78,B86,C2,C20,C28,C46,C6,C71 |
Chr8:26292647 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B90,B92 |
Chr8:26292707 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B134,B22 |
Chr8:26292905 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B28,C11,C69 |
Chr8:26292947 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B90,B92 |
Chr8:26293088 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057778571.1PF14215
bHLH-MYC_N 36-206 aa
PF00010
HLH 261-307 aa
PF23177
bHLH_IRO3 264-317 aa
PF22754
bHLH-TF_ACT-like_plant 351-423 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057778571.1 |
Pfam | PF14215 |
bHLH-MYC_N | Family | 36 | 206 | 1.2e-51 | 176.3 | bHLH-MYC and R2R3-MYB transcription factors N-terminal |
XP_057778571.1 |
Pfam | PF00010 |
HLH | Domain | 261 | 307 | 1.3e-12 | 48.0 | Helix-loop-helix DNA-binding domain |
XP_057778571.1 |
Pfam | PF23177 |
bHLH_IRO3 | Domain | 264 | 317 | 3.9e-10 | 40.7 | Iron-related transcription factor 3 bHLH domain |
XP_057778571.1 |
Pfam | PF22754 |
bHLH-TF_ACT-like_plant | Domain | 351 | 423 | 7.4e-06 | 26.7 | Plant bHLH transcription factor, ACT-like domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。