当前解析结果
SmilChr08G002684| 统一新 Gene ID | SmilChr08G002684 |
|---|---|
| 名称 | SmilChr08G002684 |
| 描述 | ubiquitin-60S ribosomal protein L40 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 26445835 - 26447987 / + |
| NCBI Gene ID | LOC130997316 |
|---|---|
| GeneID | 130997316 |
| locus_tag | - |
| NCBI Name | LOC130997316 |
| 原始查询 | SmilChr08G002684 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ubiquitin-60S ribosomal protein L40 |
| 产物 | ubiquitin-60S ribosomal protein L40 |
| Arabidopsis | AT2G36170 (AT2G36170)60S ribosomal protein L40-1 [Source:NCBI gene (formerly Entrezgene);Acc:818189] identity=99.2; qcov=1; evalue=5.62e-92; confidence=high |
| Rice | Os09g0452700- identity=80.6; qcov=1.05; evalue=1.21e-75; confidence=high |
| GO | GO:0003735 (structural constituent of ribosome); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0005840 (ribosome); GO:0006412 (translation); GO:0016567 (protein ubiquitination); GO:0019941 (modification-dependent protein catabolic process); GO:0031386 (protein tag activity); GO:0031625 (ubiquitin protein ligase binding) |
| KEGG | smil03010 (Ribosome - Salvia miltiorrhiza (redroot sage)); smil04120 (Ubiquitin mediated proteolysis - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00240 (ubiquitin); PF01020 (Ribosomal_L40e); PF11976 (Rad60-SLD); PF14560 (Ubiquitin_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997316 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057778576.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057778576.1 |
| 3 | Nucleus | 细胞核 | 0.80000 | XP_057778576.1 |
| 4 | Nucleoplasm | 核质 | 0.40000 | XP_057778576.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057778576.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:26446008 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B1,B12,B71,B89 |
Chr8:26446036 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
Chr8:26446044 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B12 |
Chr8:26446089 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B15,B32 |
Chr8:26446241 |
G |
GA |
1bp_insertion | frameshift_variant | 2 | B35,B59 |
Chr8:26446241 |
G |
GA |
1bp_insertion | CDS_variant | 2 | B35,B59 |
Chr8:26446263 |
C |
T |
EMS_canonical_SNV | stop_gained | 2 | B35,B59 |
Chr8:26446263 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B35,B59 |
Chr8:26446412 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C29 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057778576.1PF11976
Rad60-SLD 1-71 aa
PF00240
ubiquitin 3-74 aa
PF14560
Ubiquitin_2 11-69 aa
PF01020
Ribosomal_L40e 78-127 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057778576.1 |
Pfam | PF11976 |
Rad60-SLD | Family | 1 | 71 | 6.6e-18 | 65.0 | Ubiquitin-2 like Rad60 SUMO-like |
XP_057778576.1 |
Pfam | PF00240 |
ubiquitin | Domain | 3 | 74 | 1e-32 | 112.4 | Ubiquitin family |
XP_057778576.1 |
Pfam | PF14560 |
Ubiquitin_2 | Domain | 11 | 69 | 5.8e-05 | 24.2 | Ubiquitin-like domain |
XP_057778576.1 |
Pfam | PF01020 |
Ribosomal_L40e | Domain | 78 | 127 | 1.4e-31 | 108.9 | Ribosomal L40e family |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。