当前解析结果
SmilChr08G002686| 统一新 Gene ID | SmilChr08G002686 |
|---|---|
| 名称 | SmilChr08G002686 |
| 描述 | uncharacterized SmilChr08G002686 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 26476623 - 26477450 / - |
| NCBI Gene ID | LOC130998253 |
|---|---|
| GeneID | 130998253 |
| locus_tag | - |
| NCBI Name | LOC130998253 |
| 原始查询 | SmilChr08G002686 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os12g0292200; species=rice; confidence=low |
| 产物 | hit=Os12g0292200; species=rice; confidence=low |
| Arabidopsis | -- |
| Rice | Os12g0292200- identity=32.3; qcov=0.338; evalue=2.3e-10; confidence=low |
| GO | GO:0004190 (aspartic-type endopeptidase activity); GO:0006508 (proteolysis) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998253 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057779668.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057779668.1 |
| 3 | Cytosol | 细胞质基质 | 0.80000 | XP_057779668.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057779668.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057779668.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:26476656 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B46,B64,C47 |
Chr8:26476677 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B137,B29,B58 |
Chr8:26476694 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | C14 |
Chr8:26476694 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C14 |
Chr8:26476716 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C87 |
Chr8:26476745 |
G |
A |
EMS_canonical_SNV | stop_gained | 26 | A1,A14,A15,A25,A4,A9,B132,B134,B140,B18,B2,B21,B31,B59,B74,B83,C2,C51,C63,C65,C67,C73,C82,D11,D2,D3 |
Chr8:26476876 |
AT |
A |
1bp_deletion | frameshift_variant | 12 | B115,B13,B130,B28,B53,B77,B88,C42,C46,C49,C81,D10 |
Chr8:26476889 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B115,B78,C45,C80,D4 |
Chr8:26476906 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr8:26476908 |
T |
TC |
1bp_insertion | frameshift_variant | 9 | B112,B120,B124,B17,B51,C35,C37,C57,C86 |
Chr8:26476916 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:26476926 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B113,B137,B33,C23,D6 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。