当前解析结果
SmilChr08G002689| 统一新 Gene ID | SmilChr08G002689 |
|---|---|
| 名称 | SmilChr08G002689 |
| 描述 | calcium-transporting ATPase, endoplasmic reticulum-type |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 26494036 - 26499212 / - |
| NCBI Gene ID | LOC130997320 |
|---|---|
| GeneID | 130997320 |
| locus_tag | - |
| NCBI Name | LOC130997320 |
| 原始查询 | SmilChr08G002689 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | calcium-transporting ATPase, endoplasmic reticulum-type |
| 产物 | calcium-transporting ATPase%2C endoplasmic reticulum-type |
| Arabidopsis | AT4G00900 (ECA2)ER-type Ca2+-ATPase 2 [Source:NCBI gene (formerly Entrezgene);Acc:827984] identity=77.8; qcov=0.999; evalue=0; confidence=high |
| Rice | Os03g0281600 (OsECA1)- identity=66.7; qcov=0.986; evalue=0; confidence=high |
| GO | GO:0005388 (P-type calcium transporter activity); GO:0005524 (ATP binding); GO:0006874 (intracellular calcium ion homeostasis); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0070588 (calcium ion transmembrane transport) |
| KEGG | - |
| Pfam | PF00122 (E1-E2_ATPase); PF00689 (Cation_ATPase_C); PF00690 (Cation_ATPase_N); PF00702 (Hydrolase); PF13246 (Cation_ATPase) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997320 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 0.80000 | XP_057778579.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 0.40000 | XP_057778579.1 |
| 3 | Cell membrane | 细胞膜 | 0.20000 | XP_057778579.1 |
| 4 | Golgi apparatus | 高尔基体 | 0.20000 | XP_057778579.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057778579.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:26494565 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:26494566 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B104,B74,C73,D2 |
Chr8:26494642 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B109,B97,C8 |
Chr8:26494824 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C31 |
Chr8:26494910 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B53 |
Chr8:26494973 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B88 |
Chr8:26495525 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B2 |
Chr8:26495592 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A18,B49,B98,C32,C68 |
Chr8:26495638 |
AT |
A |
1bp_deletion | frameshift_variant | 1 | B16 |
Chr8:26495638 |
AT |
A |
1bp_deletion | CDS_variant | 1 | B16 |
Chr8:26497042 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr8:26497139 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B74,C73,D2 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057778579.1PF00690
Cation_ATPase_N 13-80 aa
PF00122
E1-E2_ATPase 134-249 aa
PF13246
Cation_ATPase 424-633 aa
PF00702
Hydrolase 620-744 aa
PF00689
Cation_ATPase_C 815-1041 aa
XP_057778581.1PF00690
Cation_ATPase_N 13-80 aa
PF00122
E1-E2_ATPase 134-249 aa
PF13246
Cation_ATPase 424-633 aa
PF00702
Hydrolase 620-744 aa
PF00689
Cation_ATPase_C 815-1041 aa
XP_057778582.1PF00690
Cation_ATPase_N 13-80 aa
PF00122
E1-E2_ATPase 134-249 aa
PF13246
Cation_ATPase 424-633 aa
PF00702
Hydrolase 620-744 aa
PF00689
Cation_ATPase_C 815-1041 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057778579.1 |
Pfam | PF00690 |
Cation_ATPase_N | Domain | 13 | 80 | 8.4e-19 | 67.7 | Cation transporter/ATPase, N-terminus |
XP_057778579.1 |
Pfam | PF00122 |
E1-E2_ATPase | Domain | 134 | 249 | 8.3e-26 | 90.5 | P-type ATPase actuator domain |
XP_057778579.1 |
Pfam | PF13246 |
Cation_ATPase | Family | 424 | 633 | 2.8e-37 | 129.0 | P-type ATPase, cytoplasmic domain N |
XP_057778579.1 |
Pfam | PF00702 |
Hydrolase | Domain | 620 | 744 | 1.1e-16 | 62.5 | haloacid dehalogenase-like hydrolase |
XP_057778579.1 |
Pfam | PF00689 |
Cation_ATPase_C | Family | 815 | 1041 | 3.3e-46 | 158.0 | Cation transporting ATPase, C-terminus |
XP_057778581.1 |
Pfam | PF00690 |
Cation_ATPase_N | Domain | 13 | 80 | 8.4e-19 | 67.7 | Cation transporter/ATPase, N-terminus |
XP_057778581.1 |
Pfam | PF00122 |
E1-E2_ATPase | Domain | 134 | 249 | 8.3e-26 | 90.5 | P-type ATPase actuator domain |
XP_057778581.1 |
Pfam | PF13246 |
Cation_ATPase | Family | 424 | 633 | 2.8e-37 | 129.0 | P-type ATPase, cytoplasmic domain N |
XP_057778581.1 |
Pfam | PF00702 |
Hydrolase | Domain | 620 | 744 | 1.1e-16 | 62.5 | haloacid dehalogenase-like hydrolase |
XP_057778581.1 |
Pfam | PF00689 |
Cation_ATPase_C | Family | 815 | 1041 | 3.3e-46 | 158.0 | Cation transporting ATPase, C-terminus |
XP_057778582.1 |
Pfam | PF00690 |
Cation_ATPase_N | Domain | 13 | 80 | 8.4e-19 | 67.7 | Cation transporter/ATPase, N-terminus |
XP_057778582.1 |
Pfam | PF00122 |
E1-E2_ATPase | Domain | 134 | 249 | 8.3e-26 | 90.5 | P-type ATPase actuator domain |
XP_057778582.1 |
Pfam | PF13246 |
Cation_ATPase | Family | 424 | 633 | 2.8e-37 | 129.0 | P-type ATPase, cytoplasmic domain N |
XP_057778582.1 |
Pfam | PF00702 |
Hydrolase | Domain | 620 | 744 | 1.1e-16 | 62.5 | haloacid dehalogenase-like hydrolase |
XP_057778582.1 |
Pfam | PF00689 |
Cation_ATPase_C | Family | 815 | 1041 | 3.3e-46 | 158.0 | Cation transporting ATPase, C-terminus |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。