当前解析结果
SmilChr08G002717| 统一新 Gene ID | SmilChr08G002717 |
|---|---|
| 名称 | SmilChr08G002717 |
| 描述 | exportin-2 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 26778220 - 26783477 / - |
| NCBI Gene ID | LOC130997346 |
|---|---|
| GeneID | 130997346 |
| locus_tag | - |
| NCBI Name | LOC130997346 |
| 原始查询 | SmilChr08G002717 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | exportin-2 |
| 产物 | exportin-2 |
| Arabidopsis | AT2G46520 (AT2G46520)cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter [Source:NCBI gene (formerly Entrezgene);Acc:819263] identity=65.8; qcov=1; evalue=0; confidence=high |
| Rice | Os01g0235400- identity=50.8; qcov=0.558; evalue=0; confidence=medium |
| GO | GO:0005049 (nuclear export signal receptor activity); GO:0005635 (nuclear envelope); GO:0005829 (cytosol); GO:0006606 (protein import into nucleus); GO:0006611 (protein export from nucleus); GO:0031267 (small GTPase binding) |
| KEGG | smil03013 (Nucleocytoplasmic transport - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF03378 (CAS_CSE1); PF03810 (IBN_N); PF08506 (Cse1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997346 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057778621.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057778621.1 |
| 3 | Nucleus membrane | 核膜 | 0.60000 | XP_057778621.1 |
| 4 | Nuclear pore complex | 核孔复合体 | 0.20000 | XP_057778621.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057778621.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:26780339 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A3,B17,B27,B72 |
Chr8:26780384 |
CT |
C |
1bp_deletion | frameshift_variant | 21 | A25,B100,B117,B14,B25,B47,B55,B6,B69,B8,B83,C20,C22,C23,C25,C67,C71,C72,C76,D1,D10 |
Chr8:26780554 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | B83 |
Chr8:26780554 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B83 |
Chr8:26780629 |
T |
TGG |
2bp_insertion | frameshift_variant | 10 | A20,A25,B108,B133,B37,B53,C1,C22,C40,D7 |
Chr8:26781186 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B34,B37,D11 |
Chr8:26781561 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B83 |
Chr8:26781568 |
TA |
T |
1bp_deletion | frameshift_variant | 1 | B83 |
Chr8:26781568 |
TA |
T |
1bp_deletion | CDS_variant | 1 | B83 |
Chr8:26781753 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B97 |
Chr8:26781915 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B1,B85 |
Chr8:26783039 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B47 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057778621.1PF03810
IBN_N 31-107 aa
PF08506
Cse1 166-535 aa
PF03378
CAS_CSE1 536-963 aa
XP_057778622.1PF03810
IBN_N 31-107 aa
PF08506
Cse1 166-535 aa
PF03378
CAS_CSE1 536-963 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057778621.1 |
Pfam | PF03810 |
IBN_N | Repeat | 31 | 107 | 1.6e-11 | 44.8 | Importin-beta N-terminal domain |
XP_057778621.1 |
Pfam | PF08506 |
Cse1 | Repeat | 166 | 535 | 2e-126 | 422.5 | Cse1 |
XP_057778621.1 |
Pfam | PF03378 |
CAS_CSE1 | Repeat | 536 | 963 | 4.8e-145 | 484.1 | CAS/CSE protein, C-terminus |
XP_057778622.1 |
Pfam | PF03810 |
IBN_N | Repeat | 31 | 107 | 1.6e-11 | 44.8 | Importin-beta N-terminal domain |
XP_057778622.1 |
Pfam | PF08506 |
Cse1 | Repeat | 166 | 535 | 2e-126 | 422.5 | Cse1 |
XP_057778622.1 |
Pfam | PF03378 |
CAS_CSE1 | Repeat | 536 | 963 | 4.8e-145 | 484.1 | CAS/CSE protein, C-terminus |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。