当前解析结果
SmilChr08G002721| 统一新 Gene ID | SmilChr08G002721 |
|---|---|
| 名称 | SmilChr08G002721 |
| 描述 | uncharacterized SmilChr08G002721 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 26838201 - 26843576 / - |
| NCBI Gene ID | LOC130997350 |
|---|---|
| GeneID | 130997350 |
| locus_tag | - |
| NCBI Name | LOC130997350 |
| 原始查询 | SmilChr08G002721 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | zinc knuckle (CCHC-type) family protein [Source:NCBI gene (formerly Entrezgene);Acc:827935]; symbol=AT4G00980; hit=AT4G00980; species=arabidopsis; confidence=low |
| 产物 | zinc knuckle (CCHC-type) family protein [Source:NCBI gene (formerly Entrezgene);Acc:827935]; symbol=AT4G00980; hit=AT4G00980; species=arabidopsis; confidence=low |
| Arabidopsis | AT4G00980 (AT4G00980)zinc knuckle (CCHC-type) family protein [Source:NCBI gene (formerly Entrezgene);Acc:827935] identity=42.5; qcov=0.395; evalue=2.83e-60; confidence=low |
| Rice | Os01g0706000- identity=37.2; qcov=0.27; evalue=1.58e-27; confidence=weak |
| GO | GO:0003677 (DNA binding); GO:0006355 (regulation of DNA-templated transcription); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF00098 (zf-CCHC); PF02229 (PC4); PF08766 (DEK_C); PF14223 (Retrotran_gag_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997350 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057778625.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057778625.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057778625.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057778625.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057778625.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:26838863 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr8:26838885 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C84 |
Chr8:26838955 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C40 |
Chr8:26839035 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B53 |
Chr8:26839190 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B74,C73 |
Chr8:26839495 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C52 |
Chr8:26843136 |
G |
A |
EMS_canonical_SNV | stop_gained | 11 | B135,B22,B34,B60,B8,B82,B83,C15,C42,C52,C84 |
Chr8:26843142 |
G |
A |
EMS_canonical_SNV | stop_gained | 3 | A22,B76,C49 |
Chr8:26843142 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A22,B76,C49 |
Chr8:26843183 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A22,B140,B67,B76,C49 |
Chr8:26843194 |
GTC |
G |
2bp_deletion | frameshift_variant | 80 | A13,A14,A18,A19,A22,A4,A8,B11,B110,B112,B113,B120,B129,B13,B133,B135,B140,B16,B17,B19,B21,B22,B27,B3,B30,B34,B4,B41,B46,B5,B54,B57,B58,B59,B6,B60,B62,B65,B66,B67,B69,B73,B76,B79,B8,B81,B84,B86,B89,B9,B90,B92,B94,C1,C10,C11,C15,C23,C26,C28,C3,C36,C41,C42,C43,C48,C49,C5,C50,C56,C57,C65,C66,C69,C74,C77,C81,C84,C85,D2 |
Chr8:26843224 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A18,B57,C50 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057778625.1PF08766
DEK_C 11-64 aa
PF02229
PC4 120-173 aa
PF14223
Retrotran_gag_2 393-568 aa
PF00098
zf-CCHC 600-615 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057778625.1 |
Pfam | PF08766 |
DEK_C | Domain | 11 | 64 | 1.5e-07 | 31.9 | DEK C terminal domain |
XP_057778625.1 |
Pfam | PF02229 |
PC4 | Domain | 120 | 173 | 9.4e-11 | 41.8 | Transcriptional Coactivator p15 (PC4) |
XP_057778625.1 |
Pfam | PF14223 |
Retrotran_gag_2 | Domain | 393 | 568 | 4e-17 | 63.2 | gag-polypeptide of LTR copia-type |
XP_057778625.1 |
Pfam | PF00098 |
zf-CCHC | Domain | 600 | 615 | 3.7e-06 | 27.5 | Zinc knuckle |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。