Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002723`

染色体: Chr08 坐标: 26850216-26867237 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002723`
名称	SmilChr08G002723
描述	uncharacterized SmilChr08G002723
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	26850216 - 26867237 / `+`

ID 对照

NCBI Gene ID	`LOC130997351`
GeneID	`130997351`
locus_tag	`-`
NCBI Name	`LOC130997351`
原始查询	`SmilChr08G002723`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829224]; symbol=AT4G30990; hit=AT4G30990; species=arabidopsis; confidence=high
产物	ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829224]; symbol=AT4G30990; hit=AT4G30990; species=arabidopsis; confidence=high
Arabidopsis	`AT4G30990` (AT4G30990) ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829224] identity=46.1; qcov=1.01; evalue=0; confidence=high
Rice	`Os01g0584800` - identity=63; qcov=0.017; evalue=1.18e-14; confidence=weak
GO	GO:0005730 (nucleolus); GO:0030686 (90S preribosome); GO:0032040 (small-subunit processome)
KEGG	-
Pfam	PF07539 (UTP20_N); PF20416 (UTP20); PF23099 (UTP20_C)
InterPro	-
eggNOG	-
NR	GeneID:130997351

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057778626.1`
2	Chromosome	染色体	0.00000	`XP_057778626.1`
3	Centromere	着丝粒	0.00000	`XP_057778626.1`
4	Chromatin	染色质	0.00000	`XP_057778626.1`
5	Telomere	端粒	0.00000	`XP_057778626.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:26853477`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B1,C36
`Chr8:26853619`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr8:26855269`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:26855522`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B74
`Chr8:26855522`	`GC`	`G`	1bp_deletion	CDS_variant	1	B74
`Chr8:26855663`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr8:26856191`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B33,B49,B98,C32,C68
`Chr8:26856227`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B74
`Chr8:26856858`	`CA`	`C`	1bp_deletion	frameshift_variant	1	B125
`Chr8:26856858`	`CA`	`C`	1bp_deletion	CDS_variant	1	B125
`Chr8:26856861`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B101,B121,B131,B79,C23
`Chr8:26856888`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B74,C73

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057778626.1

2690 aa

1345

2690

UTP20_N

UTP20

UTP20_C

PF07539 UTP20_N 886-1532 aa PF20416 UTP20 1743-1958 aa PF23099 UTP20_C 2587-2680 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057778626.1`	Pfam	`PF07539`	UTP20_N	Repeat	886	1532	6.3e-104	349.2	U3 small nucleolar RNA-associated protein 20, N-terminal
`XP_057778626.1`	Pfam	`PF20416`	UTP20	Repeat	1743	1958	9.1e-65	218.9	U3 small nucleolar RNA-associated protein 20 domain
`XP_057778626.1`	Pfam	`PF23099`	UTP20_C	Repeat	2587	2680	3.7e-14	53.4	Small subunit processome component 20 homolog, C-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057922643.1
TTGTAAACAAGCAGCCTTTCGTTAAACCTCCTTCCTGCCCAAACCTAAAACCCTGACCCTGACTCGCAGGGCTTCGCCGGAACACAGTGGGCGGCGGTGGAGCTCAGGCGCTTCGATTACCAGTTAACGGCGGAAGAATTCAATCATGGCGACTTCTTCCGACGCTAGGGCAGTAAAGTCTCTCAACAAATCCACCGGCCGCCGCCGCTTCGTCTTCAAGACGTTTTCACAAAGAATTGAGGAAATCGACATAGATGTGT...

CDS

1 records

下载 CDS FASTA

LOC130997351
ATGGCGACTTCTTCCGACGCTAGGGCAGTAAAGTCTCTCAACAAATCCACCGGCCGCCGCCGCTTCGTCTTCAAGACGTTTTCACAAAGAATTGAGGAAATCGACATAGATGTGTACCGAAGTCTGGACCCATTGAAAGCTGAGCCATCGCGAGGCTCGTCCTTTTTCCGCGACTGTCTCACAGAATACAGAGAGCTGAACACTGCTGAGGATTTTATATCATTTTATGAGGAGATTTTTCCTCTGGTACAGACACTTCC...

Protein

1 records

下载 Protein FASTA

XP_057778626.1
MATSSDARAVKSLNKSTGRRRFVFKTFSQRIEEIDIDVYRSLDPLKAEPSRGSSFFRDCLTEYRELNTAEDFISFYEEIFPLVQTLPQIILQKDLIISSLLSGLNMEGRLSLEPILRLISALSRDLLGDFTPFLSRIIDSLISLLQSGADKDPEIIEQIFTSWSYVMMHLQKYLIEDVGHILRITANLRYYPKDYVREFMAESVSFLLRNAPIQQLKKGIKMLMTEVVEEPSEMRKSGVGVLLSHVMRITSSRLHSRTET...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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