当前解析结果
SmilChr08G002726| 统一新 Gene ID | SmilChr08G002726 |
|---|---|
| 名称 | SmilChr08G002726 |
| 描述 | aspartyl protease family protein 2 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 26890835 - 26892570 / + |
| NCBI Gene ID | LOC130997354 |
|---|---|
| GeneID | 130997354 |
| locus_tag | - |
| NCBI Name | LOC130997354 |
| 原始查询 | SmilChr08G002726 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | aspartyl protease family protein 2 |
| 产物 | aspartyl protease family protein 2 |
| Arabidopsis | AT1G01300 (AT1G01300)Eukaryotic aspartyl protease family protein [Source:NCBI gene (formerly Entrezgene);Acc:839375] identity=73.7; qcov=0.847; evalue=0; confidence=high |
| Rice | Os01g0598600- identity=58.8; qcov=0.976; evalue=1.57e-165; confidence=high |
| GO | GO:0004190 (aspartic-type endopeptidase activity); GO:0006508 (proteolysis) |
| KEGG | - |
| Pfam | PF00026 (Asp); PF14541 (TAXi_C); PF14543 (TAXi_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997354 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 1.00000 | XP_057778629.1 |
| 2 | Cell wall | 细胞壁 | 0.20000 | XP_057778629.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057778629.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057778629.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057778629.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:26891052 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B34,B37 |
Chr8:26891081 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B46,B60,C35 |
Chr8:26891129 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B131,B2,C23,C30 |
Chr8:26891437 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B24 |
Chr8:26891518 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A6,B103,B62,C14,C25 |
Chr8:26891539 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:26891569 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr8:26891977 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B85 |
Chr8:26892037 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr8:26892252 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:26892319 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057778629.1PF00026
Asp 146-198 aa
PF14543
TAXi_N 147-312 aa
PF00026
Asp 220-486 aa
PF14541
TAXi_C 335-485 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057778629.1 |
Pfam | PF00026 |
Asp | Domain | 146 | 198 | 7.9e-26 | 91.9 | Eukaryotic aspartyl protease |
XP_057778629.1 |
Pfam | PF14543 |
TAXi_N | Domain | 147 | 312 | 1.6e-55 | 188.8 | Xylanase inhibitor N-terminal |
XP_057778629.1 |
Pfam | PF00026 |
Asp | Domain | 220 | 486 | 7.9e-26 | 91.9 | Eukaryotic aspartyl protease |
XP_057778629.1 |
Pfam | PF14541 |
TAXi_C | Domain | 335 | 485 | 2.9e-37 | 128.7 | Xylanase inhibitor C-terminal |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。