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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G002771

染色体: Chr08 坐标: 27352667-27359277 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G002771
名称SmilChr08G002771
描述pentatricopeptide repeat-containing protein At5g04810, chloroplastic
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向27352667 - 27359277 / +

ID 对照

NCBI Gene IDLOC130997394
GeneID130997394
locus_tag-
NCBI NameLOC130997394
原始查询SmilChr08G002771

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At5g04810, chloroplastic
产物pentatricopeptide repeat-containing protein At5g04810%2C chloroplastic
ArabidopsisAT5G04810 (AT5G04810)
pentatricopeptide (PPR) repeat-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:830360]
identity=70.2; qcov=0.917; evalue=0; confidence=high
RiceOs04g0684500 (WSL5)
-
identity=64; qcov=0.863; evalue=0; confidence=high
GOGO:0003723 (RNA binding); GO:0005515 (protein binding)
KEGG-
PfamPF00076 (RRM_1); PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:130997394

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Chloroplast 叶绿体 1.00000 XP_057778667.1
2 Chloroplast stroma 叶绿体基质 0.20000 XP_057778667.1
3 Nucleus 细胞核 0.00000 XP_057778667.1
4 Chromosome 染色体 0.00000 XP_057778667.1
5 Centromere 着丝粒 0.00000 XP_057778667.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:27352763 TCC T 2bp_deletion frameshift_variant 1 A25
Chr8:27352763 TCC T 2bp_deletion CDS_variant 1 A25
Chr8:27353087 G A EMS_canonical_SNV CDS_variant 1 B40
Chr8:27353133 G A EMS_canonical_SNV CDS_variant 3 B71,C80,D2
Chr8:27353391 G A EMS_canonical_SNV CDS_variant 1 B24
Chr8:27354750 C T EMS_canonical_SNV CDS_variant 1 C65
Chr8:27354839 C T EMS_canonical_SNV CDS_variant 2 B106,B61
Chr8:27355511 G A EMS_canonical_SNV CDS_variant 1 C31
Chr8:27355849 G A EMS_canonical_SNV CDS_variant 3 A1,B88,C8
Chr8:27356559 C T EMS_canonical_SNV CDS_variant 1 B108
Chr8:27357135 C T EMS_canonical_SNV CDS_variant 2 B51,C35
Chr8:27357223 C T EMS_canonical_SNV CDS_variant 4 B41,C31,C70,C86

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057778667.1
926 aa
N
1
463
926
RRM_1
PPR
PPR_2
PPR_3
TPR_24
PPR_3
PPR_2
PPR
PPR_3
PPR
PPR_long
PPR
PPR_3
PPR
TPR_24
PPR_2
PPR_3
PPR
PPR
PPR_long
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_2
TPR_24
PPR
PPR_long
PPR_2
PPR
PPR_3
PPR
PPR_2
PPR_3
PPR_1
PPR
PPR_long
PPR_1
PPR_2
PPR
TPR_24
PPR_3
PPR_1
PPR
PPR_2
PPR_3
PPR_1
PPR
PPR_2
C
PF00076 RRM_1 145-217 aa PF01535 PPR 291-318 aa PF13041 PPR_2 293-333 aa PF13812 PPR_3 295-332 aa PF23276 TPR_24 296-411 aa PF13812 PPR_3 310-366 aa PF13041 PPR_2 320-369 aa PF01535 PPR 324-353 aa PF13812 PPR_3 345-399 aa PF01535 PPR 358-386 aa PF17177 PPR_long 368-504 aa PF01535 PPR 394-423 aa PF13812 PPR_3 414-474 aa PF01535 PPR 429-458 aa PF23276 TPR_24 449-554 aa PF13041 PPR_2 460-507 aa PF13812 PPR_3 462-505 aa PF01535 PPR 463-493 aa PF01535 PPR 499-528 aa PF17177 PPR_long 514-609 aa PF13812 PPR_3 518-574 aa PF12854 PPR_1 526-559 aa PF13041 PPR_2 530-570 aa PF01535 PPR 534-561 aa PF13812 PPR_3 569-609 aa PF13041 PPR_2 569-612 aa PF23276 TPR_24 570-662 aa PF01535 PPR 572-598 aa PF17177 PPR_long 584-699 aa PF13041 PPR_2 600-648 aa PF01535 PPR 604-633 aa PF13812 PPR_3 624-668 aa PF01535 PPR 639-668 aa PF13041 PPR_2 639-684 aa PF13812 PPR_3 661-715 aa PF12854 PPR_1 667-699 aa PF01535 PPR 673-702 aa PF17177 PPR_long 682-820 aa PF12854 PPR_1 702-734 aa PF13041 PPR_2 706-754 aa PF01535 PPR 709-738 aa PF23276 TPR_24 718-824 aa PF13812 PPR_3 729-784 aa PF12854 PPR_1 737-769 aa PF01535 PPR 744-773 aa PF13041 PPR_2 747-786 aa PF13812 PPR_3 766-810 aa PF12854 PPR_1 772-804 aa PF01535 PPR 779-808 aa PF13041 PPR_2 779-822 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057778667.1 Pfam PF00076 RRM_1 Domain 145 217 6e-11 42.8 RNA recognition motif
XP_057778667.1 Pfam PF01535 PPR Repeat 291 318 8.1e-90 289.7 PPR repeat
XP_057778667.1 Pfam PF13041 PPR_2 Repeat 293 333 6.2e-112 366.3 PPR repeat family
XP_057778667.1 Pfam PF13812 PPR_3 Repeat 295 332 9.9e-82 269.7 Pentatricopeptide repeat domain
XP_057778667.1 Pfam PF23276 TPR_24 Repeat 296 411 4.5e-45 153.5 Pentatricopeptide repeat-containing protein
XP_057778667.1 Pfam PF13812 PPR_3 Repeat 310 366 9.9e-82 269.7 Pentatricopeptide repeat domain
XP_057778667.1 Pfam PF13041 PPR_2 Repeat 320 369 6.2e-112 366.3 PPR repeat family
XP_057778667.1 Pfam PF01535 PPR Repeat 324 353 8.1e-90 289.7 PPR repeat
XP_057778667.1 Pfam PF13812 PPR_3 Repeat 345 399 9.9e-82 269.7 Pentatricopeptide repeat domain
XP_057778667.1 Pfam PF01535 PPR Repeat 358 386 8.1e-90 289.7 PPR repeat
XP_057778667.1 Pfam PF17177 PPR_long Repeat 368 504 3.2e-53 181.0 Pentacotripeptide-repeat region of PRORP
XP_057778667.1 Pfam PF01535 PPR Repeat 394 423 8.1e-90 289.7 PPR repeat
XP_057778667.1 Pfam PF13812 PPR_3 Repeat 414 474 9.9e-82 269.7 Pentatricopeptide repeat domain
XP_057778667.1 Pfam PF01535 PPR Repeat 429 458 8.1e-90 289.7 PPR repeat
XP_057778667.1 Pfam PF23276 TPR_24 Repeat 449 554 4.5e-45 153.5 Pentatricopeptide repeat-containing protein
XP_057778667.1 Pfam PF13041 PPR_2 Repeat 460 507 6.2e-112 366.3 PPR repeat family
XP_057778667.1 Pfam PF13812 PPR_3 Repeat 462 505 9.9e-82 269.7 Pentatricopeptide repeat domain
XP_057778667.1 Pfam PF01535 PPR Repeat 463 493 8.1e-90 289.7 PPR repeat
XP_057778667.1 Pfam PF01535 PPR Repeat 499 528 8.1e-90 289.7 PPR repeat
XP_057778667.1 Pfam PF17177 PPR_long Repeat 514 609 3.2e-53 181.0 Pentacotripeptide-repeat region of PRORP
XP_057778667.1 Pfam PF13812 PPR_3 Repeat 518 574 9.9e-82 269.7 Pentatricopeptide repeat domain
XP_057778667.1 Pfam PF12854 PPR_1 Repeat 526 559 7.4e-92 301.5 PPR repeat
XP_057778667.1 Pfam PF13041 PPR_2 Repeat 530 570 6.2e-112 366.3 PPR repeat family
XP_057778667.1 Pfam PF01535 PPR Repeat 534 561 8.1e-90 289.7 PPR repeat
XP_057778667.1 Pfam PF13812 PPR_3 Repeat 569 609 9.9e-82 269.7 Pentatricopeptide repeat domain
XP_057778667.1 Pfam PF13041 PPR_2 Repeat 569 612 6.2e-112 366.3 PPR repeat family
XP_057778667.1 Pfam PF23276 TPR_24 Repeat 570 662 4.5e-45 153.5 Pentatricopeptide repeat-containing protein
XP_057778667.1 Pfam PF01535 PPR Repeat 572 598 8.1e-90 289.7 PPR repeat
XP_057778667.1 Pfam PF17177 PPR_long Repeat 584 699 3.2e-53 181.0 Pentacotripeptide-repeat region of PRORP
XP_057778667.1 Pfam PF13041 PPR_2 Repeat 600 648 6.2e-112 366.3 PPR repeat family
XP_057778667.1 Pfam PF01535 PPR Repeat 604 633 8.1e-90 289.7 PPR repeat
XP_057778667.1 Pfam PF13812 PPR_3 Repeat 624 668 9.9e-82 269.7 Pentatricopeptide repeat domain
XP_057778667.1 Pfam PF01535 PPR Repeat 639 668 8.1e-90 289.7 PPR repeat
XP_057778667.1 Pfam PF13041 PPR_2 Repeat 639 684 6.2e-112 366.3 PPR repeat family
XP_057778667.1 Pfam PF13812 PPR_3 Repeat 661 715 9.9e-82 269.7 Pentatricopeptide repeat domain
XP_057778667.1 Pfam PF12854 PPR_1 Repeat 667 699 7.4e-92 301.5 PPR repeat
XP_057778667.1 Pfam PF01535 PPR Repeat 673 702 8.1e-90 289.7 PPR repeat
XP_057778667.1 Pfam PF17177 PPR_long Repeat 682 820 3.2e-53 181.0 Pentacotripeptide-repeat region of PRORP
XP_057778667.1 Pfam PF12854 PPR_1 Repeat 702 734 7.4e-92 301.5 PPR repeat
XP_057778667.1 Pfam PF13041 PPR_2 Repeat 706 754 6.2e-112 366.3 PPR repeat family
XP_057778667.1 Pfam PF01535 PPR Repeat 709 738 8.1e-90 289.7 PPR repeat
XP_057778667.1 Pfam PF23276 TPR_24 Repeat 718 824 4.5e-45 153.5 Pentatricopeptide repeat-containing protein
XP_057778667.1 Pfam PF13812 PPR_3 Repeat 729 784 9.9e-82 269.7 Pentatricopeptide repeat domain
XP_057778667.1 Pfam PF12854 PPR_1 Repeat 737 769 7.4e-92 301.5 PPR repeat
XP_057778667.1 Pfam PF01535 PPR Repeat 744 773 8.1e-90 289.7 PPR repeat
XP_057778667.1 Pfam PF13041 PPR_2 Repeat 747 786 6.2e-112 366.3 PPR repeat family
XP_057778667.1 Pfam PF13812 PPR_3 Repeat 766 810 9.9e-82 269.7 Pentatricopeptide repeat domain
XP_057778667.1 Pfam PF12854 PPR_1 Repeat 772 804 7.4e-92 301.5 PPR repeat
XP_057778667.1 Pfam PF01535 PPR Repeat 779 808 8.1e-90 289.7 PPR repeat
XP_057778667.1 Pfam PF13041 PPR_2 Repeat 779 822 6.2e-112 366.3 PPR repeat family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057922684.1
GCTAGTATAAAATAGTTTGAGAAGAAGAGTGATGAAACAATGGATATCTTCTCCATCTCCTCCACCGTTCAATGCTCTCACACTCCACCACATTTTTCCACCTCCACTTCCGCCGCCTCATTCACTCGAGCTTCCAGCTCGTCGCAAGACAGTGCCCACAAACCCACCACCAACTCCCCCGACCTCCGCCGCCCCATCACCACCAACAAGCCCCTGAAAACATCCACTTCACGCTCCTCTCACTTCCCAGAAAACCCCCT...

CDS

1 records

下载 CDS FASTA
LOC130997394
ATGGATATCTTCTCCATCTCCTCCACCGTTCAATGCTCTCACACTCCACCACATTTTTCCACCTCCACTTCCGCCGCCTCATTCACTCGAGCTTCCAGCTCGTCGCAAGACAGTGCCCACAAACCCACCACCAACTCCCCCGACCTCCGCCGCCCCATCACCACCAACAAGCCCCTGAAAACATCCACTTCACGCTCCTCTCACTTCCCAGAAAACCCCCTCAAGAAATTGGTCAATCCCCGCAACCCTTCCATCGCCAA...

Protein

1 records

下载 Protein FASTA
XP_057778667.1
MDIFSISSTVQCSHTPPHFSTSTSAASFTRASSSSQDSAHKPTTNSPDLRRPITTNKPLKTSTSRSSHFPENPLKKLVNPRNPSIANSSSHDTISGKLWLSSKLSPPPPPPPPPPPLQERQVDNGISGNSDENEKEVEFREKGKIFVGNLPLWIKKIELAEFFRQFGPIKNVILIKGHDELERNMGFGFVIYSGNTAEKAAMKAVEFDGVEFHGRVLTVTLDNGQRVKGKYAERARWVDGKVGEEYRSEWHEEREGSRRE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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