当前解析结果
SmilChr08G002778| 统一新 Gene ID | SmilChr08G002778 |
|---|---|
| 名称 | SmilChr08G002778 |
| 描述 | exocyst complex component EXO70A1-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 27485200 - 27492269 / - |
| NCBI Gene ID | LOC130997401 |
|---|---|
| GeneID | 130997401 |
| locus_tag | - |
| NCBI Name | LOC130997401 |
| 原始查询 | SmilChr08G002778 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | exocyst complex component EXO70A1-like |
| 产物 | exocyst complex component EXO70A1-like |
| Arabidopsis | AT5G03540 (EXO70A1)exocyst subunit exo70 family protein A1 [Source:NCBI gene (formerly Entrezgene);Acc:831809] identity=80.2; qcov=0.979; evalue=0; confidence=high |
| Rice | Os11g0157400 (OsEXO70A3)- identity=71.3; qcov=0.983; evalue=0; confidence=high |
| GO | GO:0000145 (exocyst); GO:0005546 (phosphatidylinositol-4,5-bisphosphate binding); GO:0006887 (exocytosis) |
| KEGG | - |
| Pfam | PF03081 (Exo70_C); PF20669 (Exo70_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997401 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057778674.1 |
| 2 | Cell membrane | 细胞膜 | 0.60000 | XP_057778674.1 |
| 3 | Trans-golgi network | Trans-golgi network | 0.60000 | XP_057778674.1 |
| 4 | Endocytic vesicle | Endocytic vesicle | 0.40000 | XP_057778674.1 |
| 5 | Clathrin-coated vesicle | Clathrin-coated vesicle | 0.40000 | XP_057778674.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:27485635 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr8:27486107 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C31 |
Chr8:27487249 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A4,B121,B131,B79,C8 |
Chr8:27487803 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B12 |
Chr8:27488425 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B12,B124 |
Chr8:27488934 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B79 |
Chr8:27489583 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C73 |
Chr8:27491958 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C73 |
Chr8:27492012 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C65 |
Chr8:27492027 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B67,C17,C48 |
Chr8:27492061 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr8:27492085 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057778674.1PF20669
Exo70_N 82-163 aa
PF03081
Exo70_C 288-647 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057778674.1 |
Pfam | PF20669 |
Exo70_N | Repeat | 82 | 163 | 8.6e-20 | 71.5 | Exocyst complex component Exo70 N-terminal |
XP_057778674.1 |
Pfam | PF03081 |
Exo70_C | Repeat | 288 | 647 | 2.3e-134 | 448.8 | Exo70 exocyst complex subunit C-terminal |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。