当前解析结果
SmilChr08G002792| 统一新 Gene ID | SmilChr08G002792 |
|---|---|
| 名称 | SmilChr08G002792 |
| 描述 | uncharacterized SmilChr08G002792 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 27627574 - 27628949 / + |
| NCBI Gene ID | LOC130998269 |
|---|---|
| GeneID | 130998269 |
| locus_tag | - |
| NCBI Name | LOC130998269 |
| 原始查询 | SmilChr08G002792 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hAT dimerization domain-containing protein / transposase-like protein [Source:NCBI gene (formerly Entrezgene);Acc:833333]; symbol=AT5G33406; hit=AT5G33406; species=arabidopsis; confidence=high |
| 产物 | hAT dimerization domain-containing protein / transposase-like protein [Source:NCBI gene (formerly Entrezgene);Acc:833333]; symbol=AT5G33406; hit=AT5G33406; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G33406 (AT5G33406)hAT dimerization domain-containing protein / transposase-like protein [Source:NCBI gene (formerly Entrezgene);Acc:833333] identity=46.2; qcov=0.926; evalue=7.81e-96; confidence=high |
| Rice | Os09g0499600- identity=40; qcov=0.836; evalue=6.32e-63; confidence=medium |
| GO | GO:0046983 (protein dimerization activity) |
| KEGG | - |
| Pfam | PF05699 (Dimer_Tnp_hAT) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998269 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057779683.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057779683.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057779683.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057779683.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057779683.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:27627606 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C16 |
Chr8:27627609 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B28 |
Chr8:27627626 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr8:27627700 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr8:27627742 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A4,C16 |
Chr8:27627756 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr8:27627779 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B66,B8 |
Chr8:27627793 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:27628041 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B10,B60,B64 |
Chr8:27628099 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C39,D2 |
Chr8:27628101 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C73 |
Chr8:27628264 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057779683.1PF05699
Dimer_Tnp_hAT 151-220 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057779683.1 |
Pfam | PF05699 |
Dimer_Tnp_hAT | Domain | 151 | 220 | 1.6e-13 | 50.9 | hAT family C-terminal dimerisation region |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。