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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G002796

染色体: Chr08 坐标: 27663404-27668161 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G002796
名称SmilChr08G002796
描述calcium-dependent protein kinase 1-like
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向27663404 - 27668161 / -

ID 对照

NCBI Gene IDLOC130997414
GeneID130997414
locus_tag-
NCBI NameLOC130997414
原始查询SmilChr08G002796

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述calcium-dependent protein kinase 1-like
产物calcium-dependent protein kinase 1-like
ArabidopsisAT5G04870 (CPK1)
calcium dependent protein kinase 1 [Source:NCBI gene (formerly Entrezgene);Acc:830366]
identity=74.4; qcov=1.08; evalue=0; confidence=high
RiceOs03g0788500 (CDPK10)
-
identity=71.3; qcov=1.05; evalue=0; confidence=high
GOGO:0004683 (calcium/calmodulin-dependent protein kinase activity); GO:0005509 (calcium ion binding); GO:0005516 (calmodulin binding); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0009931 (calcium-dependent protein serine/threonine kinase activity); GO:0018105 (peptidyl-serine phosphorylation); GO:0035556 (intracellular signal transduction); GO:0046777 (protein autophosphorylation)
KEGGsmil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage)); smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage))
PfamPF00036 (EF-hand_1); PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF12763 (EH); PF13202 (EF-hand_5); PF13405 (EF-hand_6); PF13499 (EF-hand_7); PF13833 (EF-hand_8)
InterPro-
eggNOG-
NRGeneID:130997414

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 0.80000 XP_057778700.1
2 Cytosol 细胞质基质 0.40000 XP_057778700.1
3 Cytoplasmic vesicle 细胞质囊泡 0.20000 XP_057778700.1
4 Cytoplasm 细胞质 0.20000 XP_057778701.1
5 Trans-golgi network Trans-golgi network 0.20000 XP_057778700.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:27663640 C T EMS_canonical_SNV CDS_variant 1 D10
Chr8:27663748 G A EMS_canonical_SNV CDS_variant 5 B125,B26,C21,C36,C77
Chr8:27663906 G A EMS_canonical_SNV CDS_variant 2 B66,B8
Chr8:27663924 G A EMS_canonical_SNV CDS_variant 1 B123
Chr8:27663993 G A EMS_canonical_SNV CDS_variant 1 B108
Chr8:27664293 C T EMS_canonical_SNV CDS_variant 5 B100,B32,C1,C61,C85
Chr8:27664371 C T EMS_canonical_SNV CDS_variant 2 B15,C15
Chr8:27665458 G A EMS_canonical_SNV CDS_variant 1 B79
Chr8:27665599 G A EMS_canonical_SNV CDS_variant 3 B60,B64,C72
Chr8:27665611 T TA 1bp_insertion frameshift_variant 41 A13,A9,B108,B124,B125,B128,B134,B136,B140,B2,B22,B36,B4,B46,B49,B53,B54,B57,B6,B63,B91,B98,C10,C12,C16,C17,C27,C33,C38,C40,C42,C46,C49,C53,C56,C58,C62,C79,C83,D10,D9
Chr8:27665661 G A EMS_canonical_SNV CDS_variant 1 C46
Chr8:27665790 C T EMS_canonical_SNV CDS_variant 2 B66,B8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057778700.1
611 aa
N
1
306
611
PK_Tyr_Ser-Thr
Pkinase
EF-hand_8
EF-hand_5
EF-hand_1
EF-hand_6
EF-hand_7
EF-hand_8
EF-hand_5
EF-hand_8
EF-hand_7
EF-hand_1
EF-hand_6
EF-hand_5
EH
EF-hand_8
EF-hand_5
EF-hand_1
C
PF07714 PK_Tyr_Ser-Thr 109-325 aa PF00069 Pkinase 109-404 aa PF13833 EF-hand_8 436-473 aa PF13202 EF-hand_5 452-474 aa PF00036 EF-hand_1 452-478 aa PF13405 EF-hand_6 452-480 aa PF13499 EF-hand_7 452-511 aa PF13833 EF-hand_8 464-512 aa PF13202 EF-hand_5 488-509 aa PF13833 EF-hand_8 513-544 aa PF13499 EF-hand_7 522-583 aa PF00036 EF-hand_1 525-548 aa PF13405 EF-hand_6 525-551 aa PF13202 EF-hand_5 527-546 aa PF12763 EH 527-583 aa PF13833 EF-hand_8 556-584 aa PF13202 EF-hand_5 558-582 aa PF00036 EF-hand_1 558-584 aa
XP_057778701.1
573 aa
N
1
286
573
PK_Tyr_Ser-Thr
Pkinase
EF-hand_8
EF-hand_5
EF-hand_1
EF-hand_6
EF-hand_7
EF-hand_8
EF-hand_5
EF-hand_8
EF-hand_7
EF-hand_1
EF-hand_6
EF-hand_5
EH
EF-hand_8
EF-hand_5
EF-hand_1
C
PF07714 PK_Tyr_Ser-Thr 109-360 aa PF00069 Pkinase 109-366 aa PF13833 EF-hand_8 398-435 aa PF13202 EF-hand_5 414-436 aa PF00036 EF-hand_1 414-440 aa PF13405 EF-hand_6 414-442 aa PF13499 EF-hand_7 414-473 aa PF13833 EF-hand_8 426-474 aa PF13202 EF-hand_5 450-471 aa PF13833 EF-hand_8 475-506 aa PF13499 EF-hand_7 484-545 aa PF00036 EF-hand_1 487-510 aa PF13405 EF-hand_6 487-513 aa PF13202 EF-hand_5 489-508 aa PF12763 EH 489-545 aa PF13833 EF-hand_8 518-546 aa PF13202 EF-hand_5 520-544 aa PF00036 EF-hand_1 520-546 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057778700.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 109 325 1.4e-24 87.6 Protein tyrosine and serine/threonine kinase
XP_057778700.1 Pfam PF00069 Pkinase Domain 109 404 2.5e-74 250.7 Protein kinase domain
XP_057778700.1 Pfam PF13833 EF-hand_8 Domain 436 473 2.8e-20 72.5 EF-hand domain pair
XP_057778700.1 Pfam PF13202 EF-hand_5 Domain 452 474 6.6e-25 86.1 EF hand
XP_057778700.1 Pfam PF00036 EF-hand_1 Domain 452 478 1e-33 113.1 EF hand domain
XP_057778700.1 Pfam PF13405 EF-hand_6 Domain 452 480 3.3e-27 92.3 EF-hand domain
XP_057778700.1 Pfam PF13499 EF-hand_7 Domain 452 511 4e-31 107.9 EF-hand domain pair
XP_057778700.1 Pfam PF13833 EF-hand_8 Domain 464 512 2.8e-20 72.5 EF-hand domain pair
XP_057778700.1 Pfam PF13202 EF-hand_5 Domain 488 509 6.6e-25 86.1 EF hand
XP_057778700.1 Pfam PF13833 EF-hand_8 Domain 513 544 2.8e-20 72.5 EF-hand domain pair
XP_057778700.1 Pfam PF13499 EF-hand_7 Domain 522 583 4e-31 107.9 EF-hand domain pair
XP_057778700.1 Pfam PF00036 EF-hand_1 Domain 525 548 1e-33 113.1 EF hand domain
XP_057778700.1 Pfam PF13405 EF-hand_6 Domain 525 551 3.3e-27 92.3 EF-hand domain
XP_057778700.1 Pfam PF13202 EF-hand_5 Domain 527 546 6.6e-25 86.1 EF hand
XP_057778700.1 Pfam PF12763 EH Domain 527 583 9.3e-10 39.1 EH domain
XP_057778700.1 Pfam PF13833 EF-hand_8 Domain 556 584 2.8e-20 72.5 EF-hand domain pair
XP_057778700.1 Pfam PF13202 EF-hand_5 Domain 558 582 6.6e-25 86.1 EF hand
XP_057778700.1 Pfam PF00036 EF-hand_1 Domain 558 584 1e-33 113.1 EF hand domain
XP_057778701.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 109 360 5.1e-26 92.3 Protein tyrosine and serine/threonine kinase
XP_057778701.1 Pfam PF00069 Pkinase Domain 109 366 1.6e-77 261.1 Protein kinase domain
XP_057778701.1 Pfam PF13833 EF-hand_8 Domain 398 435 2e-20 73.0 EF-hand domain pair
XP_057778701.1 Pfam PF13202 EF-hand_5 Domain 414 436 4.9e-25 86.5 EF hand
XP_057778701.1 Pfam PF00036 EF-hand_1 Domain 414 440 7.3e-34 113.5 EF hand domain
XP_057778701.1 Pfam PF13405 EF-hand_6 Domain 414 442 2.4e-27 92.7 EF-hand domain
XP_057778701.1 Pfam PF13499 EF-hand_7 Domain 414 473 3.2e-31 108.2 EF-hand domain pair
XP_057778701.1 Pfam PF13833 EF-hand_8 Domain 426 474 2e-20 73.0 EF-hand domain pair
XP_057778701.1 Pfam PF13202 EF-hand_5 Domain 450 471 4.9e-25 86.5 EF hand
XP_057778701.1 Pfam PF13833 EF-hand_8 Domain 475 506 2e-20 73.0 EF-hand domain pair
XP_057778701.1 Pfam PF13499 EF-hand_7 Domain 484 545 3.2e-31 108.2 EF-hand domain pair
XP_057778701.1 Pfam PF00036 EF-hand_1 Domain 487 510 7.3e-34 113.5 EF hand domain
XP_057778701.1 Pfam PF13405 EF-hand_6 Domain 487 513 2.4e-27 92.7 EF-hand domain
XP_057778701.1 Pfam PF13202 EF-hand_5 Domain 489 508 4.9e-25 86.5 EF hand
XP_057778701.1 Pfam PF12763 EH Domain 489 545 8e-10 39.3 EH domain
XP_057778701.1 Pfam PF13833 EF-hand_8 Domain 518 546 2e-20 73.0 EF-hand domain pair
XP_057778701.1 Pfam PF13202 EF-hand_5 Domain 520 544 4.9e-25 86.5 EF hand
XP_057778701.1 Pfam PF00036 EF-hand_1 Domain 520 546 7.3e-34 113.5 EF hand domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057922718.1
CTGTCAAAAATGCGAATTTTTATAGCAATAAAAACGCGTTTTTTCCGAGAGGTTGTCTGACTAAATGCATCAATCTGCCACAGCATATAAATAAACGGACAAATACTCGCATGTTAATTCTTTTTTTTGCTCGTCTCGCATGTTAATTCTTGTTCGCATTATTGTTTGTCTCGAGTTTTTTCAGTAATTTAATCCAAGCATCACTTCGCATAATCTAGAGCTAGTGGAGGACTGGATGAAACCTGAGATTCATCAAGATC...
XM_057922717.1
GTTGTCTGACTAAATGCATCAATCTGCCACAGCATATAAATAAACGGACAAATACTCGCATGTTAATTCTTTTTTTTGCTCGTCTCGCATGTTAATTCTTGTTCGCATTATTGTTTGTCTCGAGTTTTTTCAGTAATTTAATCCAAGCATCACTTCGCATAATCTAGAGCTAGTGGAGGACTGGATGAAACCTGAGATTCATCAAGATCTCAACTTTTTCCGCAGTTTGACCCTTGATTTTGCAGCGAGTTCTTGTTGAA...

CDS

2 records

下载 CDS FASTA
LOC130997414
ATGGGGAACACTTGTGTTGGACCGGGAATAACGAAAAACAACTTCATTCAATCTGTCTCCGCTGCCATGTGGCGGACCCCAGTCCCGGAGAGTACTAATGGCTCCTCTGTCAATGGGGGGAGTGTCAAGAACGAGGCTCAGGTGGAGCCGGAGTCGCCCATGCCAGTGCAAAACACGCCACCGGAGCAGGTGACAATGCCGAAGCCTGAGGTGAAGCAGGAGGAGAAGGTGAATGTTAAGAAACCGATGAAGAGGAATAC...
LOC130997414
ATGGGGAACACTTGTGTTGGACCGGGAATAACGAAAAACAACTTCATTCAATCTGTCTCCGCTGCCATGTGGCGGACCCCAGTCCCGGAGAGTACTAATGGCTCCTCTGTCAATGGGGGGAGTGTCAAGAACGAGGCTCAGGTGGAGCCGGAGTCGCCCATGCCAGTGCAAAACACGCCACCGGAGCAGGTGACAATGCCGAAGCCTGAGGTGAAGCAGGAGGAGAAGGTGAATGTTAAGAAACCGATGAAGAGGAATAC...

Protein

2 records

下载 Protein FASTA
XP_057778700.1
MGNTCVGPGITKNNFIQSVSAAMWRTPVPESTNGSSVNGGSVKNEAQVEPESPMPVQNTPPEQVTMPKPEVKQEEKVNVKKPMKRNTSAGLRTDSVLQRKTGNLKEFFTMGKKLGQGQFGTTFLCVEKSTGTQYACKSIAKRKLLTDEDVEDVRREIQIMHHLAGHPNVISIKGAYEDAVAVHVVMELCAGGELFDRIIQRGHYSERKAAELTRTIVGVVEACHSLGVMHRDLKPENFLLVDQKEDSLLKTIDFGLSMFF...
XP_057778701.1
MGNTCVGPGITKNNFIQSVSAAMWRTPVPESTNGSSVNGGSVKNEAQVEPESPMPVQNTPPEQVTMPKPEVKQEEKVNVKKPMKRNTSAGLRTDSVLQRKTGNLKEFFTMGKKLGQGQFGTTFLCVEKSTGTQYACKSIAKRKLLTDEDVEDVRREIQIMHHLAGHPNVISIKGAYEDAVAVHVVMELCAGGELFDRIIQRGHYSERKAAELTRTIVGVVEACHSLGVMHRDLKPENFLLVDQKEDSLLKTIDFGLSMFF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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