当前解析结果
SmilChr08G002798| 统一新 Gene ID | SmilChr08G002798 |
|---|---|
| 名称 | SmilChr08G002798 |
| 描述 | probable lipid-A-disaccharide synthase, mitochondrial |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 27709117 - 27714214 / - |
| NCBI Gene ID | LOC130997417 |
|---|---|
| GeneID | 130997417 |
| locus_tag | - |
| NCBI Name | LOC130997417 |
| 原始查询 | SmilChr08G002798 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable lipid-A-disaccharide synthase, mitochondrial |
| 产物 | probable lipid-A-disaccharide synthase%2C mitochondrial |
| Arabidopsis | AT2G04560 (LpxB)transferases, transferring glycosyl groups [Source:NCBI gene (formerly Entrezgene);Acc:814998] identity=60.6; qcov=0.965; evalue=0; confidence=high |
| Rice | Os01g0752600- identity=52.5; qcov=0.943; evalue=6.46e-160; confidence=high |
| GO | GO:0005543 (phospholipid binding); GO:0008915 (lipid-A-disaccharide synthase activity); GO:0009245 (lipid A biosynthetic process) |
| KEGG | smil00540 (Lipopolysaccharide biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF02684 (LpxB) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997417 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057778705.1 |
| 2 | Chloroplast | 叶绿体 | 0.20000 | XP_057778705.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057778705.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057778705.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057778705.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:27709651 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C76 |
Chr8:27709659 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B107,B66,B8 |
Chr8:27709778 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B15,C15 |
Chr8:27709822 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B60,B64,C72 |
Chr8:27709841 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C39,D2 |
Chr8:27710263 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B133,B53,B71,B94,C80 |
Chr8:27710264 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B77,C19 |
Chr8:27710748 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C39,C83,D3 |
Chr8:27711388 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C23 |
Chr8:27711810 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B66,B8 |
Chr8:27712245 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057778705.1PF02684
LpxB 45-431 aa
XP_057778706.1PF02684
LpxB 45-431 aa
XP_057778707.1PF02684
LpxB 45-431 aa
XP_057778708.1PF02684
LpxB 45-431 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057778705.1 |
Pfam | PF02684 |
LpxB | Family | 45 | 431 | 2.2e-73 | 248.0 | Lipid-A-disaccharide synthetase |
XP_057778706.1 |
Pfam | PF02684 |
LpxB | Family | 45 | 431 | 2.2e-73 | 248.0 | Lipid-A-disaccharide synthetase |
XP_057778707.1 |
Pfam | PF02684 |
LpxB | Family | 45 | 431 | 2.2e-73 | 248.0 | Lipid-A-disaccharide synthetase |
XP_057778708.1 |
Pfam | PF02684 |
LpxB | Family | 45 | 431 | 2.2e-73 | 248.0 | Lipid-A-disaccharide synthetase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。