Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002810`

染色体: Chr08 坐标: 27949646-27954006 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002810`
名称	SmilChr08G002810
描述	SWR1 complex subunit 2
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	27949646 - 27954006 / `-`

ID 对照

NCBI Gene ID	`LOC130997434`
GeneID	`130997434`
locus_tag	`-`
NCBI Name	`LOC130997434`
原始查询	`SmilChr08G002810`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	SWR1 complex subunit 2
产物	SWR1 complex subunit 2
Arabidopsis	`AT2G36740` (SWC2) DNA binding protein SWC2 [Source:NCBI gene (formerly Entrezgene);Acc:818246] identity=62.4; qcov=0.967; evalue=2.41e-138; confidence=high
Rice	`Os08g0192400` - identity=56.6; qcov=0.986; evalue=6.72e-110; confidence=high
GO	GO:0005634 (nucleus); GO:0006338 (chromatin remodeling); GO:0006355 (regulation of DNA-templated transcription); GO:0140849 (ATP-dependent H2AZ histone chaperone activity)
KEGG	smil03082 (ATP-dependent chromatin remodeling - Salvia miltiorrhiza (redroot sage))
Pfam	PF05764 (YL1); PF08265 (YL1_C)
InterPro	-
eggNOG	-
NR	GeneID:130997434

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057778740.1`
2	Chromosome	染色体	0.20000	`XP_057778740.1`
3	Centromere	着丝粒	0.00000	`XP_057778740.1`
4	Chromatin	染色质	0.00000	`XP_057778740.1`
5	Telomere	端粒	0.00000	`XP_057778740.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:27949903`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B46
`Chr8:27949923`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B132
`Chr8:27952642`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr8:27952733`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B134,B74,C2
`Chr8:27952750`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B13

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057778740.1

360 aa

180

360

YL1

YL1_C

PF05764 YL1 16-236 aa PF08265 YL1_C 267-295 aa

XP_057778741.1

360 aa

180

360

YL1

YL1_C

PF05764 YL1 16-236 aa PF08265 YL1_C 267-295 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057778740.1`	Pfam	`PF05764`	YL1	Family	16	236	4.3e-39	135.8	YL1 nuclear protein
`XP_057778740.1`	Pfam	`PF08265`	YL1_C	Domain	267	295	2.3e-12	47.2	YL1 nuclear protein C-terminal domain
`XP_057778741.1`	Pfam	`PF05764`	YL1	Family	16	236	4.3e-39	135.8	YL1 nuclear protein
`XP_057778741.1`	Pfam	`PF08265`	YL1_C	Domain	267	295	2.3e-12	47.2	YL1 nuclear protein C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057922758.1
CCGCTATTTCTAAAACCCGGTCCAGTTTTCTAAATGCAAGTACCCTGAGACTGAGTCAACCCGTCGCGTTTAAAAAGGTTCAATTTCCTCCCCCGCGAAAAAGAAAAATCCGTAACTGTGAATTTGTTGTGGTGAAGTGTTCGACCAAATGTCTGAGTGAGATTAGGGCTGCAGCGGGAGCGGAGCCTCGTTTTTTTGCCTAAATTAGGCTGAGCGGAATCCATGGACGCCGGCAAAGAGGAGGCGCAGCAACATGTCTT...

XM_057922757.1
AAAGAAAAATCCGTAACTGTGAATTTGTTGTGGTGAAGGTGAAAAAACTCATTCAATTTATAGAAAGAATCAATCTGTAGTGATAATCGCTTCATGAGTATTTTGGATTGTGAATCCAGTGTTCGACCAAATGTCTGAGTGAGATTAGGGCTGCAGCGGGAGCGGAGCCTCGTTTTTTTGCCTAAATTAGGCTGAGCGGAATCCATGGACGCCGGCAAAGAGGAGGCGCAGCAACATGTCTTTCTCAATCGCGCCAGTCG...

CDS

2 records

下载 CDS FASTA

LOC130997434
ATGGACGCCGGCAAAGAGGAGGCGCAGCAACATGTCTTTCTCAATCGCGCCAGTCGAGCCAGCAGGGGCAAACGGATGACAAAGTTGCTTGATGATGAAGCTGAGGAAGATGAGCTCTTCTGGAATCAAGATGCTCTCAAAGAGGAAGAGGTTGATGAAGAGTACGAGGAAGAAGGAGAAGTTGCTGATGTTTTTGACAGCGACTTTGACGAAGATGAGCCTGAGGCAGATGTTGAAGGGGAGAATGAACCTGATGAGAG...

Protein

2 records

下载 Protein FASTA

XP_057778740.1
MDAGKEEAQQHVFLNRASRASRGKRMTKLLDDEAEEDELFWNQDALKEEEVDEEYEEEGEVADVFDSDFDEDEPEADVEGENEPDERTRTKKKLTYPGNPSTKKKKKKDNTPSKVESAPKDEKNLEESTPSEHHDAPDDAEVEKSVRKSTRTSVIIRQAERDAIRAALQATMKPIKRKSVGEEKKITQEEMLLEAAQTEIMNLRNLEKVLAREEEVKKRAIVHKAVYSGPQIRYLSKNGISYLTFMNGSSFDAQISTKSP...

XP_057778741.1
MDAGKEEAQQHVFLNRASRASRGKRMTKLLDDEAEEDELFWNQDALKEEEVDEEYEEEGEVADVFDSDFDEDEPEADVEGENEPDERTRTKKKLTYPGNPSTKKKKKKDNTPSKVESAPKDEKNLEESTPSEHHDAPDDAEVEKSVRKSTRTSVIIRQAERDAIRAALQATMKPIKRKSVGEEKKITQEEMLLEAAQTEIMNLRNLEKVLAREEEVKKRAIVHKAVYSGPQIRYLSKNGISYLTFMNGSSFDAQISTKSP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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