当前解析结果
SmilChr08G002824| 统一新 Gene ID | SmilChr08G002824 |
|---|---|
| 名称 | SmilChr08G002824 |
| 描述 | phosphoenolpyruvate carboxylase kinase 2-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 28080319 - 28081666 / - |
| NCBI Gene ID | LOC130997437 |
|---|---|
| GeneID | 130997437 |
| locus_tag | - |
| NCBI Name | LOC130997437 |
| 原始查询 | SmilChr08G002824 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | phosphoenolpyruvate carboxylase kinase 2-like |
| 产物 | phosphoenolpyruvate carboxylase kinase 2-like |
| Arabidopsis | AT1G08650 (PPCK1)phosphoenolpyruvate carboxylase kinase 1 [Source:NCBI gene (formerly Entrezgene);Acc:837387] identity=54.4; qcov=0.971; evalue=2.43e-100; confidence=high |
| Rice | Os02g0807000 (OsPPCK1)- identity=53.7; qcov=1.01; evalue=5.39e-100; confidence=high |
| GO | GO:0004683 (calcium/calmodulin-dependent protein kinase activity); GO:0005516 (calmodulin binding); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0009931 (calcium-dependent protein serine/threonine kinase activity); GO:0018105 (peptidyl-serine phosphorylation); GO:0035556 (intracellular signal transduction); GO:0046777 (protein autophosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF06293 (Kdo); PF07714 (PK_Tyr_Ser-Thr); PF14531 (Kinase-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997437 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057778745.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057778745.1 |
| 3 | Cytosol | 细胞质基质 | 0.60000 | XP_057778745.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057778745.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057778745.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:28080742 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C22,C4 |
Chr8:28081021 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B107 |
Chr8:28081138 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B23,B27,B55,C60 |
Chr8:28081143 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C16 |
Chr8:28081216 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A18,B33,B49,C32,C68 |
Chr8:28081240 |
GT |
G |
1bp_deletion | frameshift_variant | 1 | C77 |
Chr8:28081240 |
GT |
G |
1bp_deletion | CDS_variant | 1 | C77 |
Chr8:28081324 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B23,B27,B55,C30,C60 |
Chr8:28081360 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C22,C4 |
Chr8:28081439 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B130 |
Chr8:28081475 |
AG |
A |
1bp_deletion | frameshift_variant | 1 | C24 |
Chr8:28081475 |
AG |
A |
1bp_deletion | CDS_variant | 1 | C24 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057778745.1PF00069
Pkinase 9-269 aa
PF07714
PK_Tyr_Ser-Thr 10-264 aa
PF06293
Kdo 91-153 aa
PF14531
Kinase-like 116-257 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057778745.1 |
Pfam | PF00069 |
Pkinase | Domain | 9 | 269 | 1.5e-67 | 228.5 | Protein kinase domain |
XP_057778745.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 10 | 264 | 4.3e-27 | 95.8 | Protein tyrosine and serine/threonine kinase |
XP_057778745.1 |
Pfam | PF06293 |
Kdo | Family | 91 | 153 | 4e-05 | 23.9 | Lipopolysaccharide kinase (Kdo/WaaP) family |
XP_057778745.1 |
Pfam | PF14531 |
Kinase-like | Family | 116 | 257 | 1.4e-07 | 31.8 | Kinase-like |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。