当前解析结果
SmilChr08G002871| 统一新 Gene ID | SmilChr08G002871 |
|---|---|
| 名称 | SmilChr08G002871 |
| 描述 | kinesin-like protein KIN-14I |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 28584713 - 28589262 / - |
| NCBI Gene ID | LOC130998281 |
|---|---|
| GeneID | 130998281 |
| locus_tag | - |
| NCBI Name | LOC130998281 |
| 原始查询 | SmilChr08G002871 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | kinesin-like protein KIN-14I |
| 产物 | kinesin-like protein KIN-14I |
| Arabidopsis | AT2G47500 (AT2G47500)P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:819363] identity=61.5; qcov=0.843; evalue=0; confidence=high |
| Rice | Os12g0547500 (OsKCH1)- identity=57.9; qcov=0.801; evalue=0; confidence=high |
| GO | GO:0003777 (microtubule motor activity); GO:0005524 (ATP binding); GO:0007018 (microtubule-based movement); GO:0008017 (microtubule binding) |
| KEGG | - |
| Pfam | PF00225 (Kinesin); PF00307 (CH); PF16796 (Microtub_bd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998281 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoskeleton | 细胞骨架 | 1.00000 | XP_057779696.1 |
| 2 | Spindle | Spindle | 1.00000 | XP_057779696.1 |
| 3 | Spindle pole | Spindle pole | 0.80000 | XP_057779696.1 |
| 4 | Centrosome | 中心体 | 0.60000 | XP_057779696.1 |
| 5 | Midbody | Midbody | 0.60000 | XP_057779696.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:28585109 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C87 |
Chr8:28585233 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B80,C18,C48 |
Chr8:28585253 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B23,B55,C60,C8,D7 |
Chr8:28585437 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B26,C77 |
Chr8:28585472 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B73 |
Chr8:28585517 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B121,B79 |
Chr8:28585526 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B121,B79,C20,C53,C6 |
Chr8:28585556 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C6 |
Chr8:28585654 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:28585838 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D2 |
Chr8:28585949 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D2 |
Chr8:28585970 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B23,B55,C60,C8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057779696.1PF00307
CH 44-160 aa
PF16796
Microtub_bd 394-553 aa
PF00225
Kinesin 415-733 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057779696.1 |
Pfam | PF00307 |
CH | Domain | 44 | 160 | 3.5e-14 | 53.6 | Calponin homology (CH) domain |
XP_057779696.1 |
Pfam | PF16796 |
Microtub_bd | Domain | 394 | 553 | 1.9e-45 | 155.2 | Microtubule binding |
XP_057779696.1 |
Pfam | PF00225 |
Kinesin | Domain | 415 | 733 | 9.3e-112 | 373.9 | Kinesin motor domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。