当前解析结果
SmilChr08G002880| 统一新 Gene ID | SmilChr08G002880 |
|---|---|
| 名称 | SmilChr08G002880 |
| 描述 | probable protein disulfide-isomerase A6 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 28701973 - 28706497 / - |
| NCBI Gene ID | LOC130997488 |
|---|---|
| GeneID | 130997488 |
| locus_tag | - |
| NCBI Name | LOC130997488 |
| 原始查询 | SmilChr08G002880 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable protein disulfide-isomerase A6 |
| 产物 | probable protein disulfide-isomerase A6 |
| Arabidopsis | AT2G47470 (UNE5)thioredoxin family protein [Source:NCBI gene (formerly Entrezgene);Acc:819360] identity=76.7; qcov=0.924; evalue=0; confidence=high |
| Rice | Os05g0156300 (PDIL2)- identity=75.9; qcov=0.941; evalue=0; confidence=high |
| GO | GO:0003756 (protein disulfide isomerase activity); GO:0005783 (endoplasmic reticulum); GO:0006457 (protein folding) |
| KEGG | smil04141 (Protein processing in endoplasmic reticulum - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00085 (Thioredoxin); PF04756 (OST3_OST6); PF07749 (ERp29); PF13098 (Thioredoxin_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997488 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057778799.1 |
| 2 | Endoplasmic reticulum lumen | 内质网腔 | 1.00000 | XP_057778799.1 |
| 3 | Melanosome | Melanosome | 0.20000 | XP_057778799.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057778799.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057778799.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:28702272 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr8:28703065 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B107,D6 |
Chr8:28703072 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A9,B132 |
Chr8:28703122 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C10 |
Chr8:28703171 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B36,C38 |
Chr8:28703429 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A9,B132 |
Chr8:28703834 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B123,B14 |
Chr8:28703892 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C87 |
Chr8:28704415 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B37 |
Chr8:28705308 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr8:28706484 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B30 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057778799.1PF00085
Thioredoxin 24-126 aa
PF04756
OST3_OST6 51-137 aa
PF00085
Thioredoxin 142-245 aa
PF13098
Thioredoxin_2 154-242 aa
PF07749
ERp29 263-356 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057778799.1 |
Pfam | PF00085 |
Thioredoxin | Domain | 24 | 126 | 6.1e-69 | 229.3 | Thioredoxin |
XP_057778799.1 |
Pfam | PF04756 |
OST3_OST6 | Family | 51 | 137 | 1.8e-16 | 61.2 | OST3 / OST6 family, transporter family |
XP_057778799.1 |
Pfam | PF00085 |
Thioredoxin | Domain | 142 | 245 | 6.1e-69 | 229.3 | Thioredoxin |
XP_057778799.1 |
Pfam | PF13098 |
Thioredoxin_2 | Domain | 154 | 242 | 1.2e-14 | 55.4 | Thioredoxin-like domain |
XP_057778799.1 |
Pfam | PF07749 |
ERp29 | Domain | 263 | 356 | 3.2e-24 | 86.2 | Endoplasmic reticulum protein ERp29, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。