当前解析结果
SmilChr08G002886| 统一新 Gene ID | SmilChr08G002886 |
|---|---|
| 名称 | SmilChr08G002886 |
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 28734374 - 28736931 / - |
| NCBI Gene ID | LOC130998286 |
|---|---|
| GeneID | 130998286 |
| locus_tag | - |
| NCBI Name | LOC130998286 |
| 原始查询 | SmilChr08G002886 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 产物 | protein FAR1-RELATED SEQUENCE 5-like |
| Arabidopsis | AT4G38180 (FRS5)FAR1-related sequence 5 [Source:NCBI gene (formerly Entrezgene);Acc:829974] identity=30.1; qcov=0.594; evalue=2.13e-63; confidence=low |
| Rice | Os06g0166100- identity=38.9; qcov=0.599; evalue=2.34e-88; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | PF03101 (FAR1); PF10551 (MULE); PF21056 (ZSWIM1-3_RNaseH-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998286 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057779700.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057779700.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057779700.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057779700.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057779700.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:28734398 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C85 |
Chr8:28734457 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A18 |
Chr8:28734642 |
C |
T |
EMS_canonical_SNV | stop_gained | 64 | A10,A11,A2,A21,A24,A3,A5,B10,B100,B101,B104,B107,B117,B120,B126,B129,B131,B133,B139,B17,B19,B20,B28,B32,B36,B38,B39,B42,B43,B50,B51,B68,B70,B73,B81,B82,B85,B87,B88,B94,C1,C11,C13,C14,C17,C2,C24,C31,C35,C37,C43,C49,C5,C58,C61,C64,C66,C69,C70,C74,C75,C8,D1,D3 |
Chr8:28734724 |
TA |
T |
1bp_deletion | frameshift_variant | 3 | B108,B9,D1 |
Chr8:28734724 |
TA |
T |
1bp_deletion | CDS_variant | 3 | B108,B9,D1 |
Chr8:28734734 |
CT |
C |
1bp_deletion | frameshift_variant | 3 | B108,B9,D1 |
Chr8:28734734 |
CT |
C |
1bp_deletion | CDS_variant | 3 | B108,B9,D1 |
Chr8:28734739 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | C49 |
Chr8:28734739 |
AC |
A |
1bp_deletion | CDS_variant | 1 | C49 |
Chr8:28734749 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A18,B33,B49,C32,C68 |
Chr8:28734782 |
A |
AGC |
2bp_insertion | stop_gained,frameshift_variant | 18 | B118,B24,B28,B35,B40,B54,B59,B61,B71,B9,C16,C42,C45,C53,C66,C77,D1,D9 |
Chr8:28734783 |
TAA |
T |
2bp_deletion | frameshift_variant | 18 | B118,B24,B28,B35,B40,B54,B59,B61,B71,B9,C16,C42,C45,C53,C66,C77,D1,D9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057779700.1PF03101
FAR1 118-207 aa
PF21056
ZSWIM1-3_RNaseH-like 304-413 aa
PF10551
MULE 331-425 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057779700.1 |
Pfam | PF03101 |
FAR1 | Domain | 118 | 207 | 6e-17 | 62.9 | FAR1 DNA-binding domain |
XP_057779700.1 |
Pfam | PF21056 |
ZSWIM1-3_RNaseH-like | Domain | 304 | 413 | 4.9e-07 | 30.4 | Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain |
XP_057779700.1 |
Pfam | PF10551 |
MULE | Domain | 331 | 425 | 1.1e-28 | 100.2 | MULE transposase domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。