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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G002894

染色体: Chr08 坐标: 28834849-28838394 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G002894
名称SmilChr08G002894
描述pentatricopeptide repeat-containing protein At1g09820
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向28834849 - 28838394 / +

ID 对照

NCBI Gene IDLOC130997500
GeneID130997500
locus_tag-
NCBI NameLOC130997500
原始查询SmilChr08G002894

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At1g09820
产物pentatricopeptide repeat-containing protein At1g09820
ArabidopsisAT1G09820 (AT1G09820)
Pentatricopeptide repeat (PPR-like) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837514]
identity=46.3; qcov=1; evalue=0; confidence=high
RiceOs10g0484300
-
identity=45.5; qcov=0.863; evalue=8.62e-162; confidence=high
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:130997500

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057778807.1
2 Nucleus 细胞核 0.00000 XP_057778807.1
3 Chromosome 染色体 0.00000 XP_057778807.1
4 Centromere 着丝粒 0.00000 XP_057778807.1
5 Chromatin 染色质 0.00000 XP_057778807.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:28835313 G A EMS_canonical_SNV CDS_variant 4 B115,B98,C12,C80
Chr8:28835418 C T EMS_canonical_SNV CDS_variant 1 B49
Chr8:28835789 G A EMS_canonical_SNV CDS_variant 3 B115,B98,C80
Chr8:28835800 C T EMS_canonical_SNV CDS_variant 3 B23,C60,C73
Chr8:28835805 G A EMS_canonical_SNV CDS_variant 2 B99,C87
Chr8:28835874 G A EMS_canonical_SNV CDS_variant 1 D10
Chr8:28835946 G A EMS_canonical_SNV CDS_variant 1 C12
Chr8:28836151 C T EMS_canonical_SNV CDS_variant 1 C84
Chr8:28836215 C T EMS_canonical_SNV CDS_variant 4 B115,B98,C12,C80
Chr8:28836252 G A EMS_canonical_SNV CDS_variant 1 C82
Chr8:28836278 G A EMS_canonical_SNV CDS_variant 1 C15
Chr8:28836724 G A EMS_canonical_SNV CDS_variant 1 D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057778807.1
599 aa
N
1
300
599
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR
PPR_2
PPR_3
TPR_24
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR
PPR_2
PPR_long
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
C
PF01535 PPR 183-210 aa PF13812 PPR_3 205-263 aa PF12854 PPR_1 215-243 aa PF13041 PPR_2 215-263 aa PF01535 PPR 217-247 aa PF12854 PPR_1 245-265 aa PF01535 PPR 252-285 aa PF13041 PPR_2 267-301 aa PF13812 PPR_3 274-298 aa PF23276 TPR_24 282-384 aa PF12854 PPR_1 283-316 aa PF13041 PPR_2 287-335 aa PF01535 PPR 290-320 aa PF13812 PPR_3 310-369 aa PF12854 PPR_1 319-350 aa PF13041 PPR_2 322-371 aa PF01535 PPR 325-354 aa PF12854 PPR_1 354-383 aa PF01535 PPR 360-390 aa PF13041 PPR_2 365-403 aa PF17177 PPR_long 367-496 aa PF23276 TPR_24 378-487 aa PF13812 PPR_3 381-439 aa PF12854 PPR_1 389-420 aa PF13041 PPR_2 393-436 aa PF01535 PPR 396-424 aa PF13041 PPR_2 427-476 aa PF01535 PPR 430-460 aa PF13812 PPR_3 450-507 aa PF12854 PPR_1 458-491 aa PF13041 PPR_2 463-506 aa PF01535 PPR 465-495 aa PF13812 PPR_3 485-544 aa PF12854 PPR_1 493-526 aa PF13041 PPR_2 497-545 aa PF01535 PPR 500-529 aa PF12854 PPR_1 529-560 aa PF13041 PPR_2 532-573 aa PF01535 PPR 535-565 aa PF13812 PPR_3 540-575 aa
XP_057778808.1
599 aa
N
1
300
599
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR
PPR_2
PPR_3
TPR_24
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR
PPR_2
PPR_long
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
C
PF01535 PPR 183-210 aa PF13812 PPR_3 205-263 aa PF12854 PPR_1 215-243 aa PF13041 PPR_2 215-263 aa PF01535 PPR 217-247 aa PF12854 PPR_1 245-265 aa PF01535 PPR 252-285 aa PF13041 PPR_2 267-301 aa PF13812 PPR_3 274-298 aa PF23276 TPR_24 282-384 aa PF12854 PPR_1 283-316 aa PF13041 PPR_2 287-335 aa PF01535 PPR 290-320 aa PF13812 PPR_3 310-369 aa PF12854 PPR_1 319-350 aa PF13041 PPR_2 322-371 aa PF01535 PPR 325-354 aa PF12854 PPR_1 354-383 aa PF01535 PPR 360-390 aa PF13041 PPR_2 365-403 aa PF17177 PPR_long 367-496 aa PF23276 TPR_24 378-487 aa PF13812 PPR_3 381-439 aa PF12854 PPR_1 389-420 aa PF13041 PPR_2 393-436 aa PF01535 PPR 396-424 aa PF13041 PPR_2 427-476 aa PF01535 PPR 430-460 aa PF13812 PPR_3 450-507 aa PF12854 PPR_1 458-491 aa PF13041 PPR_2 463-506 aa PF01535 PPR 465-495 aa PF13812 PPR_3 485-544 aa PF12854 PPR_1 493-526 aa PF13041 PPR_2 497-545 aa PF01535 PPR 500-529 aa PF12854 PPR_1 529-560 aa PF13041 PPR_2 532-573 aa PF01535 PPR 535-565 aa PF13812 PPR_3 540-575 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057778807.1 Pfam PF01535 PPR Repeat 183 210 2.2e-88 285.2 PPR repeat
XP_057778807.1 Pfam PF13812 PPR_3 Repeat 205 263 4.7e-73 241.9 Pentatricopeptide repeat domain
XP_057778807.1 Pfam PF12854 PPR_1 Repeat 215 243 1.8e-114 373.8 PPR repeat
XP_057778807.1 Pfam PF13041 PPR_2 Repeat 215 263 5.8e-143 465.7 PPR repeat family
XP_057778807.1 Pfam PF01535 PPR Repeat 217 247 2.2e-88 285.2 PPR repeat
XP_057778807.1 Pfam PF12854 PPR_1 Repeat 245 265 1.8e-114 373.8 PPR repeat
XP_057778807.1 Pfam PF01535 PPR Repeat 252 285 2.2e-88 285.2 PPR repeat
XP_057778807.1 Pfam PF13041 PPR_2 Repeat 267 301 5.8e-143 465.7 PPR repeat family
XP_057778807.1 Pfam PF13812 PPR_3 Repeat 274 298 4.7e-73 241.9 Pentatricopeptide repeat domain
XP_057778807.1 Pfam PF23276 TPR_24 Repeat 282 384 6.5e-36 123.9 Pentatricopeptide repeat-containing protein
XP_057778807.1 Pfam PF12854 PPR_1 Repeat 283 316 1.8e-114 373.8 PPR repeat
XP_057778807.1 Pfam PF13041 PPR_2 Repeat 287 335 5.8e-143 465.7 PPR repeat family
XP_057778807.1 Pfam PF01535 PPR Repeat 290 320 2.2e-88 285.2 PPR repeat
XP_057778807.1 Pfam PF13812 PPR_3 Repeat 310 369 4.7e-73 241.9 Pentatricopeptide repeat domain
XP_057778807.1 Pfam PF12854 PPR_1 Repeat 319 350 1.8e-114 373.8 PPR repeat
XP_057778807.1 Pfam PF13041 PPR_2 Repeat 322 371 5.8e-143 465.7 PPR repeat family
XP_057778807.1 Pfam PF01535 PPR Repeat 325 354 2.2e-88 285.2 PPR repeat
XP_057778807.1 Pfam PF12854 PPR_1 Repeat 354 383 1.8e-114 373.8 PPR repeat
XP_057778807.1 Pfam PF01535 PPR Repeat 360 390 2.2e-88 285.2 PPR repeat
XP_057778807.1 Pfam PF13041 PPR_2 Repeat 365 403 5.8e-143 465.7 PPR repeat family
XP_057778807.1 Pfam PF17177 PPR_long Repeat 367 496 4.1e-29 102.2 Pentacotripeptide-repeat region of PRORP
XP_057778807.1 Pfam PF23276 TPR_24 Repeat 378 487 6.5e-36 123.9 Pentatricopeptide repeat-containing protein
XP_057778807.1 Pfam PF13812 PPR_3 Repeat 381 439 4.7e-73 241.9 Pentatricopeptide repeat domain
XP_057778807.1 Pfam PF12854 PPR_1 Repeat 389 420 1.8e-114 373.8 PPR repeat
XP_057778807.1 Pfam PF13041 PPR_2 Repeat 393 436 5.8e-143 465.7 PPR repeat family
XP_057778807.1 Pfam PF01535 PPR Repeat 396 424 2.2e-88 285.2 PPR repeat
XP_057778807.1 Pfam PF13041 PPR_2 Repeat 427 476 5.8e-143 465.7 PPR repeat family
XP_057778807.1 Pfam PF01535 PPR Repeat 430 460 2.2e-88 285.2 PPR repeat
XP_057778807.1 Pfam PF13812 PPR_3 Repeat 450 507 4.7e-73 241.9 Pentatricopeptide repeat domain
XP_057778807.1 Pfam PF12854 PPR_1 Repeat 458 491 1.8e-114 373.8 PPR repeat
XP_057778807.1 Pfam PF13041 PPR_2 Repeat 463 506 5.8e-143 465.7 PPR repeat family
XP_057778807.1 Pfam PF01535 PPR Repeat 465 495 2.2e-88 285.2 PPR repeat
XP_057778807.1 Pfam PF13812 PPR_3 Repeat 485 544 4.7e-73 241.9 Pentatricopeptide repeat domain
XP_057778807.1 Pfam PF12854 PPR_1 Repeat 493 526 1.8e-114 373.8 PPR repeat
XP_057778807.1 Pfam PF13041 PPR_2 Repeat 497 545 5.8e-143 465.7 PPR repeat family
XP_057778807.1 Pfam PF01535 PPR Repeat 500 529 2.2e-88 285.2 PPR repeat
XP_057778807.1 Pfam PF12854 PPR_1 Repeat 529 560 1.8e-114 373.8 PPR repeat
XP_057778807.1 Pfam PF13041 PPR_2 Repeat 532 573 5.8e-143 465.7 PPR repeat family
XP_057778807.1 Pfam PF01535 PPR Repeat 535 565 2.2e-88 285.2 PPR repeat
XP_057778807.1 Pfam PF13812 PPR_3 Repeat 540 575 4.7e-73 241.9 Pentatricopeptide repeat domain
XP_057778808.1 Pfam PF01535 PPR Repeat 183 210 2.2e-88 285.2 PPR repeat
XP_057778808.1 Pfam PF13812 PPR_3 Repeat 205 263 4.7e-73 241.9 Pentatricopeptide repeat domain
XP_057778808.1 Pfam PF12854 PPR_1 Repeat 215 243 1.8e-114 373.8 PPR repeat
XP_057778808.1 Pfam PF13041 PPR_2 Repeat 215 263 5.8e-143 465.7 PPR repeat family
XP_057778808.1 Pfam PF01535 PPR Repeat 217 247 2.2e-88 285.2 PPR repeat
XP_057778808.1 Pfam PF12854 PPR_1 Repeat 245 265 1.8e-114 373.8 PPR repeat
XP_057778808.1 Pfam PF01535 PPR Repeat 252 285 2.2e-88 285.2 PPR repeat
XP_057778808.1 Pfam PF13041 PPR_2 Repeat 267 301 5.8e-143 465.7 PPR repeat family
XP_057778808.1 Pfam PF13812 PPR_3 Repeat 274 298 4.7e-73 241.9 Pentatricopeptide repeat domain
XP_057778808.1 Pfam PF23276 TPR_24 Repeat 282 384 6.5e-36 123.9 Pentatricopeptide repeat-containing protein
XP_057778808.1 Pfam PF12854 PPR_1 Repeat 283 316 1.8e-114 373.8 PPR repeat
XP_057778808.1 Pfam PF13041 PPR_2 Repeat 287 335 5.8e-143 465.7 PPR repeat family
XP_057778808.1 Pfam PF01535 PPR Repeat 290 320 2.2e-88 285.2 PPR repeat
XP_057778808.1 Pfam PF13812 PPR_3 Repeat 310 369 4.7e-73 241.9 Pentatricopeptide repeat domain
XP_057778808.1 Pfam PF12854 PPR_1 Repeat 319 350 1.8e-114 373.8 PPR repeat
XP_057778808.1 Pfam PF13041 PPR_2 Repeat 322 371 5.8e-143 465.7 PPR repeat family
XP_057778808.1 Pfam PF01535 PPR Repeat 325 354 2.2e-88 285.2 PPR repeat
XP_057778808.1 Pfam PF12854 PPR_1 Repeat 354 383 1.8e-114 373.8 PPR repeat
XP_057778808.1 Pfam PF01535 PPR Repeat 360 390 2.2e-88 285.2 PPR repeat
XP_057778808.1 Pfam PF13041 PPR_2 Repeat 365 403 5.8e-143 465.7 PPR repeat family
XP_057778808.1 Pfam PF17177 PPR_long Repeat 367 496 4.1e-29 102.2 Pentacotripeptide-repeat region of PRORP
XP_057778808.1 Pfam PF23276 TPR_24 Repeat 378 487 6.5e-36 123.9 Pentatricopeptide repeat-containing protein
XP_057778808.1 Pfam PF13812 PPR_3 Repeat 381 439 4.7e-73 241.9 Pentatricopeptide repeat domain
XP_057778808.1 Pfam PF12854 PPR_1 Repeat 389 420 1.8e-114 373.8 PPR repeat
XP_057778808.1 Pfam PF13041 PPR_2 Repeat 393 436 5.8e-143 465.7 PPR repeat family
XP_057778808.1 Pfam PF01535 PPR Repeat 396 424 2.2e-88 285.2 PPR repeat
XP_057778808.1 Pfam PF13041 PPR_2 Repeat 427 476 5.8e-143 465.7 PPR repeat family
XP_057778808.1 Pfam PF01535 PPR Repeat 430 460 2.2e-88 285.2 PPR repeat
XP_057778808.1 Pfam PF13812 PPR_3 Repeat 450 507 4.7e-73 241.9 Pentatricopeptide repeat domain
XP_057778808.1 Pfam PF12854 PPR_1 Repeat 458 491 1.8e-114 373.8 PPR repeat
XP_057778808.1 Pfam PF13041 PPR_2 Repeat 463 506 5.8e-143 465.7 PPR repeat family
XP_057778808.1 Pfam PF01535 PPR Repeat 465 495 2.2e-88 285.2 PPR repeat
XP_057778808.1 Pfam PF13812 PPR_3 Repeat 485 544 4.7e-73 241.9 Pentatricopeptide repeat domain
XP_057778808.1 Pfam PF12854 PPR_1 Repeat 493 526 1.8e-114 373.8 PPR repeat
XP_057778808.1 Pfam PF13041 PPR_2 Repeat 497 545 5.8e-143 465.7 PPR repeat family
XP_057778808.1 Pfam PF01535 PPR Repeat 500 529 2.2e-88 285.2 PPR repeat
XP_057778808.1 Pfam PF12854 PPR_1 Repeat 529 560 1.8e-114 373.8 PPR repeat
XP_057778808.1 Pfam PF13041 PPR_2 Repeat 532 573 5.8e-143 465.7 PPR repeat family
XP_057778808.1 Pfam PF01535 PPR Repeat 535 565 2.2e-88 285.2 PPR repeat
XP_057778808.1 Pfam PF13812 PPR_3 Repeat 540 575 4.7e-73 241.9 Pentatricopeptide repeat domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057922824.1
GTGGTGGGCTGCTCGGGCCTCTTATTTGCGAGTTGCCGAGAAATTCTCCTATTGCACTTGCTCGTCTTCTTTAATTTTTCCTTGCCTTCAAACCGATTGCTCTTCTCCTCTAATTTTCCCTTGCCTCCAAACCGAGCGCGCAGGCGCAGCAGAGTGTGCGAGCTTTCTTCTCTACCGTTGCTCGTCTATTTCTTTTAAATACTCCATTTATTTGAAGAGTTTTTTGTGTGCATTATAATTCCAACAGCTCCTAAATCCTC...
XM_057922825.1
GTGGTGGGCTGCTCGGGCCTCTTATTTGCGAGTTGCCGAGAAATTCTCCTATTGCACTTGCTCGTCTTCTTTAATTTTTCCTTGCCTTCAAACCGATTGCTCTTCTCCTCTAATTTTCCCTTGCCTCCAAACCGAGCGCGCAGGCGCAGCAGAGTGTGCGAGCTTTCTTCTCTACCGTTGCTCGTCTATTTCTTTTAAATACTCCATTTATTTGAAGAGTTTTTTGTGTGCATTATAATTCCAACAGCTCCTAAATCCTC...

CDS

2 records

下载 CDS FASTA
LOC130997500
ATGTCTCGCCTCCGCCGGCTCGGCTCACAGCCATCTCTCCTCCTCCACACGTTCGCCGCCGCCAGGCCTTCCATCATTTTCGACCCGGATATCCAGTTCCGAATTTCATCCATCATCTCCCGCCAGAAGTGGTCGGAGCTCAGACCCATCATTCAATCTGAATCCTCCACCCCGGCTGATTTTCTTCGCCAGCTCTTCCAATTCGACAATTTCAACTCCGACCTCATTATATCCTTCTTCAAATGGTCGCAGCAGAGATG...
LOC130997500
ATGTCTCGCCTCCGCCGGCTCGGCTCACAGCCATCTCTCCTCCTCCACACGTTCGCCGCCGCCAGGCCTTCCATCATTTTCGACCCGGATATCCAGTTCCGAATTTCATCCATCATCTCCCGCCAGAAGTGGTCGGAGCTCAGACCCATCATTCAATCTGAATCCTCCACCCCGGCTGATTTTCTTCGCCAGCTCTTCCAATTCGACAATTTCAACTCCGACCTCATTATATCCTTCTTCAAATGGTCGCAGCAGAGATG...

Protein

2 records

下载 Protein FASTA
XP_057778807.1
MSRLRRLGSQPSLLLHTFAAARPSIIFDPDIQFRISSIISRQKWSELRPIIQSESSTPADFLRQLFQFDNFNSDLIISFFKWSQQRCNAVYSIEDYVRLFILLANEKKYPKLRSLLHTFPKQAEPVSISTFCHSLLTVSDNVCANSVVFDMFISTLVSNGKVDLAFEGFMRAGDYGFKLSARSCNSMLAALVKDGRTGNVEFAYKEMVRRRTGMDLITFNTVVSGLCKAGKLNKASDVVEDMSVRGVTPNVVTYNTLIDG...
XP_057778808.1
MSRLRRLGSQPSLLLHTFAAARPSIIFDPDIQFRISSIISRQKWSELRPIIQSESSTPADFLRQLFQFDNFNSDLIISFFKWSQQRCNAVYSIEDYVRLFILLANEKKYPKLRSLLHTFPKQAEPVSISTFCHSLLTVSDNVCANSVVFDMFISTLVSNGKVDLAFEGFMRAGDYGFKLSARSCNSMLAALVKDGRTGNVEFAYKEMVRRRTGMDLITFNTVVSGLCKAGKLNKASDVVEDMSVRGVTPNVVTYNTLIDG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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