Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002897`

染色体: Chr08 坐标: 28861171-28865488 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002897`
名称	SmilChr08G002897
描述	uncharacterized SmilChr08G002897
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	28861171 - 28865488 / `-`

ID 对照

NCBI Gene ID	`LOC130997503`
GeneID	`130997503`
locus_tag	`-`
NCBI Name	`LOC130997503`
原始查询	`SmilChr08G002897`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os01g0300900; species=rice; confidence=medium
产物	hit=Os01g0300900; species=rice; confidence=medium
Arabidopsis	`AT1G18610` (AT1G18610) Galactose oxidase/kelch repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:838442] identity=38.2; qcov=0.437; evalue=2.32e-47; confidence=low
Rice	`Os01g0300900` - identity=44.7; qcov=1.03; evalue=8.33e-142; confidence=medium
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF01344 (Kelch_1); PF07646 (Kelch_2); PF24681 (Kelch_KLHDC2_KLHL20_DRC7); PF24981 (Beta-prop_ATRN-LZTR1); PF27637 (MNM1_beta)
InterPro	-
eggNOG	-
NR	GeneID:130997503

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057778813.1`
2	Chromosome	染色体	0.00000	`XP_057778813.1`
3	Centromere	着丝粒	0.00000	`XP_057778813.1`
4	Chromatin	染色质	0.00000	`XP_057778813.1`
5	Telomere	端粒	0.00000	`XP_057778813.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:28861609`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C15
`Chr8:28861798`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:28862157`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C15
`Chr8:28862322`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:28862701`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C84
`Chr8:28862947`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B71,C78,C80
`Chr8:28862957`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C76,D8
`Chr8:28863159`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C73
`Chr8:28863379`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B113
`Chr8:28863403`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B113
`Chr8:28863568`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C73
`Chr8:28864906`	`G`	`GA`	1bp_insertion	frameshift_variant	4	B71,C12,C78,C80

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057778813.1

646 aa

323

646

Kelch_KLHDC2_KLHL20_DRC7

Kelch_1

Beta-prop_ATRN-LZTR1

Kelch_1

Kelch_KLHDC2_KLHL20_DRC7

Kelch_1

Kelch_2

MNM1_beta

PF24681 Kelch_KLHDC2_KLHL20_DRC7 15-203 aa PF01344 Kelch_1 33-61 aa PF24981 Beta-prop_ATRN-LZTR1 54-203 aa PF01344 Kelch_1 80-120 aa PF24681 Kelch_KLHDC2_KLHL20_DRC7 134-327 aa PF01344 Kelch_1 185-226 aa PF01344 Kelch_1 235-277 aa PF07646 Kelch_2 236-276 aa PF27637 MNM1_beta 521-553 aa

XP_057778814.1

645 aa

322

645

Kelch_KLHDC2_KLHL20_DRC7

Kelch_1

Beta-prop_ATRN-LZTR1

Kelch_1

Kelch_KLHDC2_KLHL20_DRC7

Kelch_1

Kelch_2

MNM1_beta

PF24681 Kelch_KLHDC2_KLHL20_DRC7 15-203 aa PF01344 Kelch_1 33-61 aa PF24981 Beta-prop_ATRN-LZTR1 54-203 aa PF01344 Kelch_1 80-120 aa PF24681 Kelch_KLHDC2_KLHL20_DRC7 134-326 aa PF01344 Kelch_1 185-226 aa PF01344 Kelch_1 235-277 aa PF07646 Kelch_2 236-276 aa PF27637 MNM1_beta 520-552 aa

XP_057778815.1

581 aa

290

581

Kelch_KLHDC2_KLHL20_DRC7

Beta-prop_ATRN-LZTR1

Kelch_1

Kelch_KLHDC2_KLHL20_DRC7

Kelch_1

Kelch_2

MNM1_beta

PF24681 Kelch_KLHDC2_KLHL20_DRC7 1-188 aa PF24981 Beta-prop_ATRN-LZTR1 2-138 aa PF01344 Kelch_1 15-55 aa PF24681 Kelch_KLHDC2_KLHL20_DRC7 113-262 aa PF01344 Kelch_1 120-161 aa PF01344 Kelch_1 170-212 aa PF07646 Kelch_2 171-211 aa PF27637 MNM1_beta 456-488 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057778813.1`	Pfam	`PF24681`	Kelch_KLHDC2_KLHL20_DRC7	Repeat	15	203	8.1e-106	353.0	KLHDC2/KLHL20/DRC7 Kelch-repeats domain
`XP_057778813.1`	Pfam	`PF01344`	Kelch_1	Repeat	33	61	6.5e-39	131.8	Kelch motif
`XP_057778813.1`	Pfam	`PF24981`	Beta-prop_ATRN-LZTR1	Repeat	54	203	7.9e-52	177.0	Attractin/LZTR1 beta-propeller
`XP_057778813.1`	Pfam	`PF01344`	Kelch_1	Repeat	80	120	6.5e-39	131.8	Kelch motif
`XP_057778813.1`	Pfam	`PF24681`	Kelch_KLHDC2_KLHL20_DRC7	Repeat	134	327	8.1e-106	353.0	KLHDC2/KLHL20/DRC7 Kelch-repeats domain
`XP_057778813.1`	Pfam	`PF01344`	Kelch_1	Repeat	185	226	6.5e-39	131.8	Kelch motif
`XP_057778813.1`	Pfam	`PF01344`	Kelch_1	Repeat	235	277	6.5e-39	131.8	Kelch motif
`XP_057778813.1`	Pfam	`PF07646`	Kelch_2	Repeat	236	276	2.2e-26	91.1	Kelch motif
`XP_057778813.1`	Pfam	`PF27637`	MNM1_beta	Domain	521	553	1.8e-10	41.0	Metabolic network modulator 1 small beta sheet domain
`XP_057778814.1`	Pfam	`PF24681`	Kelch_KLHDC2_KLHL20_DRC7	Repeat	15	203	8.7e-106	352.9	KLHDC2/KLHL20/DRC7 Kelch-repeats domain
`XP_057778814.1`	Pfam	`PF01344`	Kelch_1	Repeat	33	61	6.4e-39	131.8	Kelch motif
`XP_057778814.1`	Pfam	`PF24981`	Beta-prop_ATRN-LZTR1	Repeat	54	203	1.9e-56	192.2	Attractin/LZTR1 beta-propeller
`XP_057778814.1`	Pfam	`PF01344`	Kelch_1	Repeat	80	120	6.4e-39	131.8	Kelch motif
`XP_057778814.1`	Pfam	`PF24681`	Kelch_KLHDC2_KLHL20_DRC7	Repeat	134	326	8.7e-106	352.9	KLHDC2/KLHL20/DRC7 Kelch-repeats domain
`XP_057778814.1`	Pfam	`PF01344`	Kelch_1	Repeat	185	226	6.4e-39	131.8	Kelch motif
`XP_057778814.1`	Pfam	`PF01344`	Kelch_1	Repeat	235	277	6.4e-39	131.8	Kelch motif
`XP_057778814.1`	Pfam	`PF07646`	Kelch_2	Repeat	236	276	2.1e-26	91.2	Kelch motif
`XP_057778814.1`	Pfam	`PF27637`	MNM1_beta	Domain	520	552	1.8e-10	41.0	Metabolic network modulator 1 small beta sheet domain
`XP_057778815.1`	Pfam	`PF24681`	Kelch_KLHDC2_KLHL20_DRC7	Repeat	1	188	6.8e-94	314.0	KLHDC2/KLHL20/DRC7 Kelch-repeats domain
`XP_057778815.1`	Pfam	`PF24981`	Beta-prop_ATRN-LZTR1	Repeat	2	138	7.5e-49	167.3	Attractin/LZTR1 beta-propeller
`XP_057778815.1`	Pfam	`PF01344`	Kelch_1	Repeat	15	55	1.5e-33	114.6	Kelch motif
`XP_057778815.1`	Pfam	`PF24681`	Kelch_KLHDC2_KLHL20_DRC7	Repeat	113	262	6.8e-94	314.0	KLHDC2/KLHL20/DRC7 Kelch-repeats domain
`XP_057778815.1`	Pfam	`PF01344`	Kelch_1	Repeat	120	161	1.5e-33	114.6	Kelch motif
`XP_057778815.1`	Pfam	`PF01344`	Kelch_1	Repeat	170	212	1.5e-33	114.6	Kelch motif
`XP_057778815.1`	Pfam	`PF07646`	Kelch_2	Repeat	171	211	2.2e-21	75.3	Kelch motif
`XP_057778815.1`	Pfam	`PF27637`	MNM1_beta	Domain	456	488	1.6e-10	41.1	Metabolic network modulator 1 small beta sheet domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057922830.1
TACTACTACGACTACTACACCGCCTCCTCTGCACAAATATTTCCTCCCATCAATCCCAATGTCACACACACACACACTACACACACTGAGCCATCTCTTTCTCACACACCAAATAGAAAGAGACCAAACAACTTCCCATCATTTTCAGTAGCAAAAGCCAAGAAACAAATTAACAACCATTAAACATTGGAAACAACAAGGGTGCTACTTTAATCTTCTGTCTCTCTCACACACATATACATATACTTGCCTCGTTGACA...

XM_057922831.1
TACTACGACTACTACACCGCCTCCTCTGCACAAATATTTCCTCCCATCAATCCCAATGTCACACACACACACACTACACACACTGAGCCATCTCTTTCTCACACACCAAATAGAAAGAGACCAAACAACTTCCCATCATTTTCAGTAGCAAAAGCCAAGAAACAAATTAACAACCATTAAACATTGGAAACAACAAGGGTGCTACTTTAATCTTCTGTCTCTCTCACACACATATACATATACTTGCCTCGTTGACATGC...

CDS

3 records

下载 CDS FASTA

LOC130997503
ATGGGGTCTTTGGGAGGAGGAGGAGGAGAAGTTGCAAGAAATAATGCAATGTGGGTTTATCCAAAGATGATGGGTGCTAACCCTTCTGAGAGATGGGGACATTCTGCTTGCTACTTCAATGGTTTGATTTACATTTTTGGAGGATGCCGCGGGGGAGTGCATTTCAGCGACGTGCTGGTGTGCAATCTTGCAACGATGAGGTGGAACGTGCTCAAGACATGGGGGCAGGGGCCGGGGCCGAGAGACAGCCACAGCGCCGT...

Protein

3 records

下载 Protein FASTA

XP_057778813.1
MGSLGGGGGEVARNNAMWVYPKMMGANPSERWGHSACYFNGLIYIFGGCRGGVHFSDVLVCNLATMRWNVLKTWGQGPGPRDSHSAVLVGHKMLVFGGTNGCRKVNDLHILDLLSREWTRPECRGDPPCARESHTANVVGDEKMVIFGGSGEGEANYLNDLHVLDLNNMEWSSPEVVNKGSVPAPRDSHSAVAVGHRLFVFGGDSGYRYQGDVSVLDMNNVVWSKLDTHGPSPGARAGHAAVSIGTKVYVLGGVGDKQYY...

XP_057778814.1
MGSLGGGGGEVARNNAMWVYPKMMGANPSERWGHSACYFNGLIYIFGGCRGGVHFSDVLVCNLATMRWNVLKTWGQGPGPRDSHSAVLVGHKMLVFGGTNGCRKVNDLHILDLLSREWTRPECRGDPPCARESHTANVVGDEKMVIFGGSGEGEANYLNDLHVLDLNNMEWSSPEVVNKGSVPAPRDSHSAVAVGHRLFVFGGDSGYRYQGDVSVLDMNNVVWSKLDTHGPSPGARAGHAAVSIGTKVYVLGGVGDKQYY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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