Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002899`

染色体: Chr08 坐标: 28936597-28951371 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002899`
名称	SmilChr08G002899
描述	protein SUPPRESSOR OF QUENCHING 1, chloroplastic
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	28936597 - 28951371 / `-`

ID 对照

NCBI Gene ID	`LOC130997505`
GeneID	`130997505`
locus_tag	`-`
NCBI Name	`LOC130997505`
原始查询	`SmilChr08G002899`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein SUPPRESSOR OF QUENCHING 1, chloroplastic
产物	protein SUPPRESSOR OF QUENCHING 1%2C chloroplastic
Arabidopsis	`AT1G56500` (AT1G56500) haloacid dehalogenase-like hydrolase family protein [Source:NCBI gene (formerly Entrezgene);Acc:842103] identity=73.3; qcov=0.926; evalue=0; confidence=high
Rice	`Os03g0311300` - identity=72.9; qcov=0.393; evalue=0; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00578 (AhpC-TSA); PF00702 (Hydrolase); PF01436 (NHL); PF08534 (Redoxin); PF13419 (HAD_2); PF13905 (Thioredoxin_8)
InterPro	-
eggNOG	-
NR	GeneID:130997505

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057778823.1`
2	Chloroplast thylakoid	类囊体	0.60000	`XP_057778824.1`
3	Chloroplast membrane	叶绿体膜	0.40000	`XP_057778823.1`
4	Chloroplast stroma	叶绿体基质	0.40000	`XP_057778823.1`
5	Nucleus	细胞核	0.00000	`XP_057778823.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:28936845`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B22
`Chr8:28936863`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B13,C8,D7
`Chr8:28936885`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B15,C15
`Chr8:28936973`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B12
`Chr8:28937397`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B29,B87
`Chr8:28937432`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B15,C15,D11
`Chr8:28937895`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:28939836`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B130,B84,C28
`Chr8:28940995`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B12
`Chr8:28942300`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B22
`Chr8:28943285`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A9,B12,C51,C63,C67
`Chr8:28943287`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B15,C15

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057778823.1

1088 aa

544

1088

Hydrolase

HAD_2

Redoxin

AhpC-TSA

Thioredoxin_8

NHL

PF00702 Hydrolase 77-255 aa PF13419 HAD_2 79-262 aa PF08534 Redoxin 440-557 aa PF00578 AhpC-TSA 446-548 aa PF13905 Thioredoxin_8 453-547 aa PF01436 NHL 656-683 aa

XP_057778824.1

1082 aa

541

1082

Hydrolase

HAD_2

Redoxin

AhpC-TSA

Thioredoxin_8

NHL

PF00702 Hydrolase 77-255 aa PF13419 HAD_2 79-262 aa PF08534 Redoxin 434-551 aa PF00578 AhpC-TSA 440-542 aa PF13905 Thioredoxin_8 447-541 aa PF01436 NHL 650-677 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057778823.1`	Pfam	`PF00702`	Hydrolase	Domain	77	255	1.7e-23	84.7	haloacid dehalogenase-like hydrolase
`XP_057778823.1`	Pfam	`PF13419`	HAD_2	Family	79	262	4.2e-25	89.5	Haloacid dehalogenase-like hydrolase
`XP_057778823.1`	Pfam	`PF08534`	Redoxin	Domain	440	557	6e-08	33.3	Redoxin
`XP_057778823.1`	Pfam	`PF00578`	AhpC-TSA	Domain	446	548	1.6e-06	28.8	AhpC/TSA family
`XP_057778823.1`	Pfam	`PF13905`	Thioredoxin_8	Domain	453	547	9.3e-17	61.9	Thioredoxin-like
`XP_057778823.1`	Pfam	`PF01436`	NHL	Repeat	656	683	1.8e-30	104.1	NHL repeat
`XP_057778824.1`	Pfam	`PF00702`	Hydrolase	Domain	77	255	1.7e-23	84.8	haloacid dehalogenase-like hydrolase
`XP_057778824.1`	Pfam	`PF13419`	HAD_2	Family	79	262	4.1e-25	89.5	Haloacid dehalogenase-like hydrolase
`XP_057778824.1`	Pfam	`PF08534`	Redoxin	Domain	434	551	5.9e-08	33.3	Redoxin
`XP_057778824.1`	Pfam	`PF00578`	AhpC-TSA	Domain	440	542	1.6e-06	28.8	AhpC/TSA family
`XP_057778824.1`	Pfam	`PF13905`	Thioredoxin_8	Domain	447	541	9.2e-17	62.0	Thioredoxin-like
`XP_057778824.1`	Pfam	`PF01436`	NHL	Repeat	650	677	6.1e-29	99.3	NHL repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057922841.1
GAAAATTATAAAGGTAACACACTACGATAACGTTCTCAAGTGTCTATCGCCATAAACCAACAAATCAATCTTCCATTGCTGAAAACAAAGCACTCCCTCTTTCCATGGCCTTGAGACCAATACCGACTCCTTTTTCAGTGTGCAGCTCAAGAACCCACTTCAGGAATCTGTCTTTCTTCAACACCAAATCAAGATTTCTCGAAAATCAGTGGCCTACGAAGGATAAATCGTCGAATTTACATGGGAAGAGAACGCCTGGA...

XM_057922840.1
GAAAATTATAAAGGTAACACACTACGATAACGTTCTCAAGTGTCTATCGCCATAAACCAACAAATCAATCTTCCATTGCTGAAAACAAAGCACTCCCTCTTTCCATGGCCTTGAGACCAATACCGACTCCTTTTTCAGTGTGCAGCTCAAGAACCCACTTCAGGAATCTGTCTTTCTTCAACACCAAATCAAGATTTCTCGAAAATCAGTGGCCTACGAAGGATAAATCGTCGAATTTACATGGGAAGAGAACGCCTGGA...

CDS

2 records

下载 CDS FASTA

LOC130997505
ATGGCCTTGAGACCAATACCGACTCCTTTTTCAGTGTGCAGCTCAAGAACCCACTTCAGGAATCTGTCTTTCTTCAACACCAAATCAAGATTTCTCGAAAATCAGTGGCCTACGAAGGATAAATCGTCGAATTTACATGGGAAGAGAACGCCTGGAAGAATGGTGAAGGCGTGCGTGAGCTTGGAAGAGAGAAACCCGCCGGAAACCGGCAGTGAATGGGGGAAGGTGTCGGCGGTGCTGTTTGACATGGACGGGGTGCT...

Protein

2 records

下载 Protein FASTA

XP_057778823.1
MALRPIPTPFSVCSSRTHFRNLSFFNTKSRFLENQWPTKDKSSNLHGKRTPGRMVKACVSLEERNPPETGSEWGKVSAVLFDMDGVLCNSEELSRLAAVDVFAEMGVEVTVEDFVPFMGTGEANFLGGVASVKGVKGFNPESAKKRFFEIYLDKYAKPNSGIGFPGAYELIVQCKNKGLKVAVASSADRIKVDANLAAAGLQLSMFDAIVSADAFENLKPAPDIFLAASKILDVPTNECLVIEDALAGVQAAKSARMRCI...

XP_057778824.1
MALRPIPTPFSVCSSRTHFRNLSFFNTKSRFLENQWPTKDKSSNLHGKRTPGRMVKACVSLEERNPPETGSEWGKVSAVLFDMDGVLCNSEELSRLAAVDVFAEMGVEVTVEDFVPFMGTGEANFLGGVASVKGVKGFNPESAKKRFFEIYLDKYAKPNSGIGFPGAYELIVQCKNKGLKVAVASSADRIKVDANLAAAGLQLSMFDAIVSADAFENLKPAPDIFLAASKILDVPTNECLVIEDALAGVQAAKSARMRCI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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